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| Mutant Information |
|---|
| Mutant Name | FN_830-6-1 [Download] |
| Generation | M3 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN_830-6-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 34
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 5922858 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 14424302 | C-A | Homo | INTERGENIC | |
| SBS | Chr1 | 18761719 | T-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g188600 |
| SBS | Chr1 | 23490783 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 28839354 | C-T | Hetero | INTRON | |
| SBS | Chr2 | 8686163 | G-T | Hetero | INTRON | |
| SBS | Chr2 | 17465548 | G-A | Hetero | UTR_5_PRIME | |
| SBS | Chr2 | 17465551 | G-A | Hetero | UTR_5_PRIME | |
| SBS | Chr2 | 19911317 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 21095057 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 29461313 | C-G | Homo | INTERGENIC | |
| SBS | Chr3 | 9547443 | A-G | Homo | INTERGENIC | |
| SBS | Chr3 | 10163713 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 14072128 | G-T | Homo | INTERGENIC | |
| SBS | Chr3 | 20322016 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 35377961 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 21722894 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 13378950 | C-G | Homo | INTERGENIC | |
| SBS | Chr6 | 14916174 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 14375962 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 17303612 | A-G | Homo | INTERGENIC | |
| SBS | Chr7 | 26718303 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 5199082 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 9836376 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 3793248 | T-C | Homo | INTRON | |
| SBS | Chr10 | 5550375 | T-A | Homo | INTERGENIC | |
| SBS | Chr10 | 10615669 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 23733870 | G-T | Homo | INTERGENIC | |
| SBS | Chr11 | 19484013 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 20177927 | G-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 21673520 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 6153717 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 18059027 | T-G | Homo | INTERGENIC | |
| SBS | Chr12 | 27055543 | G-A | Hetero | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 46694 | 46698 | 4 | |
| Deletion | Chr7 | 278293 | 278294 | 1 | |
| Deletion | Chr9 | 4825546 | 4825559 | 13 | |
| Deletion | Chr12 | 7804097 | 7804099 | 2 | |
| Deletion | Chr11 | 14190136 | 14190140 | 4 | |
| Deletion | Chr9 | 14469718 | 14469725 | 7 | |
| Deletion | Chr1 | 15266121 | 15266123 | 2 | |
| Deletion | Chr12 | 17278775 | 17278777 | 2 | |
| Deletion | Chr1 | 19514982 | 19514984 | 2 | |
| Deletion | Chr3 | 23308904 | 23308905 | 1 | OsKitaake03g250900 |
| Deletion | Chr2 | 25074336 | 25074337 | 1 | |
| Deletion | Chr2 | 29929251 | 29929266 | 15 | |
| Deletion | Chr1 | 34822394 | 34822395 | 1 | |
| Deletion | Chr1 | 42137338 | 42137341 | 3 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 23427951 | 23427954 | 2 | |
| Insertion | Chr6 | 29905721 | 29905724 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 27794272 | 27794615 | OsKitaake08g229500 |
| Inversion | Chr8 | 27794297 | 27794621 | OsKitaake08g229500 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 13931056 | Chr10 | 8624148 |