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| Mutant Information |
|---|
| Mutant Name | FN_831-4-1 [Download] |
| Generation | M3 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN_831-4-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 20953873 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 3349055 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 20870073 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 27022244 | T-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 26569121 | G-T | Homo | INTERGENIC | |
| SBS | Chr4 | 791944 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 10500651 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 12634614 | C-G | Homo | INTERGENIC | |
| SBS | Chr5 | 12214435 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 24892612 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 14980242 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 24038911 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 2316156 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 3711075 | C-T | Homo | UTR_3_PRIME | |
| SBS | Chr8 | 9023869 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 13812004 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 15057870 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 18778107 | A-G | Hetero | UTR_3_PRIME | |
| SBS | Chr8 | 20742016 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 26056987 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 17575712 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 7736789 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 1828716 | G-T | Hetero | UTR_5_PRIME | |
| SBS | Chr12 | 7385937 | T-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 12852397 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 12852398 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 20887856 | A-T | Homo | INTERGENIC | |
| SBS | Chr12 | 20887857 | A-T | Homo | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 2334934 | 2334936 | 2 | |
| Deletion | Chr1 | 12467451 | 12467460 | 9 | |
| Deletion | Chr5 | 12690818 | 12690824 | 6 | OsKitaake05g098900 |
| Deletion | Chr1 | 13547866 | 13547883 | 17 | |
| Deletion | Chr10 | 15170262 | 15170263 | 1 | |
| Deletion | Chr8 | 19069001 | 19133000 | 63999 | 7 |
| Deletion | Chr8 | 19139001 | 19491000 | 351999 | 18 |
| Deletion | Chr12 | 20887672 | 20887678 | 6 | |
| Deletion | Chr11 | 23875133 | 23875134 | 1 | |
| Deletion | Chr4 | 25930491 | 25930492 | 1 | |
| Deletion | Chr4 | 26784697 | 26784702 | 5 | |
| Deletion | Chr1 | 29790150 | 29790152 | 2 | |
| Deletion | Chr2 | 31474550 | 31474560 | 10 | |
| Deletion | Chr1 | 38357836 | 38357838 | 2 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr8 | 5518092 | 5518095 | 2 | |
| Insertion | Chr9 | 22628335 | 22628338 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 6486079 | 6593576 | 2 |
| Inversion | Chr6 | 6486081 | 6593578 | 2 |
Translocations: 8
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 2154693 | Chr1 | 14447750 | |
| Translocation | Chr12 | 2534205 | Chr2 | 32565361 | 2 |
| Translocation | Chr12 | 2534307 | Chr11 | 28259551 | OsKitaake12g037800 |
| Translocation | Chr12 | 3037014 | Chr1 | 14435704 | |
| Translocation | Chr10 | 17266184 | Chr5 | 28945476 | |
| Translocation | Chr10 | 17266190 | Chr5 | 28946580 | OsKitaake05g272901 |
| Translocation | Chr11 | 28259551 | Chr2 | 32565361 | OsKitaake02g332700 |
| Translocation | Chr11 | 28261787 | Chr2 | 32565328 | OsKitaake02g332700 |