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Mutant Information

Mutant Name	FN_841-7-2 [Download]
Generation	M3
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN_841-7-2 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 20

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13638996 C-G Hetero INTERGENIC
SBS Chr1 27178943 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g264600
SBS Chr1 27178946 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g264600
SBS Chr1 27178947 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g264600
SBS Chr1 40187417 A-G Hetero INTERGENIC
SBS Chr2 24807359 T-A Hetero INTERGENIC
SBS Chr2 24807360 G-A Hetero INTERGENIC
SBS Chr3 8752163 T-G Hetero INTERGENIC
SBS Chr3 16864238 T-A Homo INTERGENIC
SBS Chr4 24029661 G-T Hetero INTERGENIC
SBS Chr6 7036854 A-T Homo INTERGENIC
SBS Chr6 24690478 G-A Hetero INTERGENIC
SBS Chr6 26937338 T-A Hetero INTERGENIC
SBS Chr7 6060862 G-C Homo INTERGENIC
SBS Chr7 21730258 C-T Hetero INTERGENIC
SBS Chr9 4755013 G-T Hetero INTERGENIC
SBS Chr10 9077072 G-A Homo INTERGENIC
SBS Chr11 4926901 G-A Hetero INTERGENIC
SBS Chr11 14983707 A-G Homo INTERGENIC
SBS Chr12 6722428 C-G Homo INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 142614 142630 16
Deletion Chr9 2483001 2505000 21999 3
Deletion Chr9 7782859 7782868 9
Deletion Chr3 8427233 8427234 1
Deletion Chr9 13431034 13431040 6
Deletion Chr1 13958557 13958558 1
Deletion Chr11 17568543 17568546 3
Deletion Chr5 22787292 22787295 3
Deletion Chr8 24248469 24248472 3

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr11 25724723 25724726 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 2795833 Chr3 26886314

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13638996	C-G	Hetero	INTERGENIC
SBS	Chr1	27178943	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g264600
SBS	Chr1	27178946	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g264600
SBS	Chr1	27178947	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g264600
SBS	Chr1	40187417	A-G	Hetero	INTERGENIC
SBS	Chr2	24807359	T-A	Hetero	INTERGENIC
SBS	Chr2	24807360	G-A	Hetero	INTERGENIC
SBS	Chr3	8752163	T-G	Hetero	INTERGENIC
SBS	Chr3	16864238	T-A	Homo	INTERGENIC
SBS	Chr4	24029661	G-T	Hetero	INTERGENIC
SBS	Chr6	7036854	A-T	Homo	INTERGENIC
SBS	Chr6	24690478	G-A	Hetero	INTERGENIC
SBS	Chr6	26937338	T-A	Hetero	INTERGENIC
SBS	Chr7	6060862	G-C	Homo	INTERGENIC
SBS	Chr7	21730258	C-T	Hetero	INTERGENIC
SBS	Chr9	4755013	G-T	Hetero	INTERGENIC
SBS	Chr10	9077072	G-A	Homo	INTERGENIC
SBS	Chr11	4926901	G-A	Hetero	INTERGENIC
SBS	Chr11	14983707	A-G	Homo	INTERGENIC
SBS	Chr12	6722428	C-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	142614	142630	16
Deletion	Chr9	2483001	2505000	21999	3
Deletion	Chr9	7782859	7782868	9
Deletion	Chr3	8427233	8427234	1
Deletion	Chr9	13431034	13431040	6
Deletion	Chr1	13958557	13958558	1
Deletion	Chr11	17568543	17568546	3
Deletion	Chr5	22787292	22787295	3
Deletion	Chr8	24248469	24248472	3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	2795833	Chr3	26886314

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes