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Mutant Information

Mutant Name	FN_846-8-1 [Download]
Generation	M3
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN_846-8-1 Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	186687	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g002500
SBS	Chr1	3813764	C-T	Hetero	UTR_3_PRIME
SBS	Chr1	21831265	A-G	Homo	INTERGENIC
SBS	Chr2	20579600	A-C	Hetero	UTR_3_PRIME
SBS	Chr2	20699628	T-G	Hetero	INTERGENIC
SBS	Chr3	1930735	C-T	Hetero	INTERGENIC
SBS	Chr3	4837497	C-T	Hetero	INTERGENIC
SBS	Chr3	6679633	G-A	Homo	INTERGENIC
SBS	Chr3	21272866	C-A	Homo	INTERGENIC
SBS	Chr3	25065704	C-T	Homo	INTERGENIC
SBS	Chr4	16302275	C-T	Homo	INTRON
SBS	Chr4	23465888	A-G	Hetero	INTERGENIC
SBS	Chr4	30240156	G-A	Homo	INTERGENIC
SBS	Chr4	34588984	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr5	942245	A-G	Hetero	INTERGENIC
SBS	Chr5	1387835	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g017200
SBS	Chr5	11483534	G-C	Hetero	INTERGENIC
SBS	Chr5	18285742	C-T	Homo	INTERGENIC
SBS	Chr5	18285743	A-T	Homo	INTERGENIC
SBS	Chr6	21850060	A-T	Hetero	INTERGENIC
SBS	Chr7	3917554	C-T	Homo	INTERGENIC
SBS	Chr7	14468623	G-A	Hetero	INTERGENIC
SBS	Chr7	23135168	A-G	Homo	INTERGENIC
SBS	Chr7	23972006	T-G	Homo	UTR_5_PRIME
SBS	Chr7	25002096	C-A	Homo	INTERGENIC
SBS	Chr7	25103845	G-T	Hetero	INTERGENIC
SBS	Chr8	18277317	G-A	Homo	INTERGENIC
SBS	Chr9	12290448	T-A	Hetero	INTERGENIC
SBS	Chr9	21111074	A-T	Homo	UTR_5_PRIME
SBS	Chr10	23459522	C-G	Hetero	INTERGENIC

Deletions: 8

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	3702386	3702387	1
Deletion	Chr12	4592983	4592985	2
Deletion	Chr6	9921568	9921581	13
Deletion	Chr12	10797341	10797343	2
Deletion	Chr8	14601087	14601089	2
Deletion	Chr4	19821927	19821929	2
Deletion	Chr1	26605231	26605232	1
Deletion	Chr1	37946349	37946350	1	OsKitaake01g404700

Insertions: 2

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr1	11434073	11434078	4
Insertion	Chr2	8493493	8493496	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	18566787	19194897
Inversion	Chr12	18566804	19194903

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	17547436	Chr1	24583414	OsKitaake01g237600
Translocation	Chr5	17548860	Chr1	24583412	OsKitaake01g237600
Translocation	Chr12	17570921	Chr5	19244079
Translocation	Chr2	20539272	Chr1	24776296
Translocation	Chr2	20539280	Chr1	24776631