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| Mutant Information |
|---|
| Mutant Name | FN_935-1 [Download] |
| Generation | M3 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN_935-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 16338284 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 16399595 | A-G | Homo | INTERGENIC | |
| SBS | Chr1 | 23504287 | A-C | Homo | INTERGENIC | |
| SBS | Chr1 | 23504299 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 26748497 | T-C | Homo | INTRON | |
| SBS | Chr1 | 37199002 | C-A | Homo | INTERGENIC | |
| SBS | Chr2 | 10280343 | T-A | Homo | INTERGENIC | |
| SBS | Chr2 | 21977881 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g214000 |
| SBS | Chr3 | 7837304 | T-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 18857431 | T-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 1606536 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 7396017 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 13840275 | T-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake05g107400 |
| SBS | Chr5 | 20421967 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 3254455 | A-G | Homo | INTRON | |
| SBS | Chr6 | 13824097 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 14385650 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 19836266 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 1380543 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 5640659 | C-G | Homo | INTERGENIC | |
| SBS | Chr8 | 24476148 | G-A | Homo | UTR_5_PRIME | |
| SBS | Chr9 | 4279382 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 13857341 | G-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 16989328 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake09g125850 |
| SBS | Chr10 | 16455643 | G-T | Homo | INTERGENIC | |
| SBS | Chr10 | 17311688 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 11752748 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 14674067 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 28706920 | C-T | Homo | INTERGENIC |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 260747 | 260750 | 3 | |
| Deletion | Chr1 | 1355707 | 1355718 | 11 | |
| Deletion | Chr6 | 3225001 | 3255000 | 29999 | 4 |
| Deletion | Chr1 | 4459807 | 4459809 | 2 | |
| Deletion | Chr7 | 6887001 | 6948000 | 60999 | 3 |
| Deletion | Chr5 | 6985178 | 6985184 | 6 | |
| Deletion | Chr6 | 14639258 | 14639260 | 2 | |
| Deletion | Chr10 | 14959862 | 14959867 | 5 | |
| Deletion | Chr3 | 18691001 | 18706000 | 14999 | OsKitaake03g225500 |
| Deletion | Chr2 | 29984488 | 29984504 | 16 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 11265399 | 11265402 | 2 | |
| Insertion | Chr1 | 27972823 | 27972826 | 2 | |
| Insertion | Chr10 | 12250585 | 12250588 | 2 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr9 | 12806688 | 13332276 | |
| Inversion | Chr11 | 15855306 | 16132241 | 2 |
| Inversion | Chr11 | 15855321 | 16135554 | OsKitaake11g127100 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 16135541 | Chr9 | 13332269 |