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| Mutant Information |
|---|
| Mutant Name | FN_949-1 [Download] |
| Generation | M3 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN_949-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 39
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 3366184 | A-G | Homo | INTERGENIC | |
| SBS | Chr1 | 28162803 | A-G | Homo | INTERGENIC | |
| SBS | Chr1 | 33702163 | C-T | Hetero | INTRON | |
| SBS | Chr1 | 33702164 | C-T | Hetero | INTRON | |
| SBS | Chr1 | 34840178 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 38247607 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 1770681 | A-G | Homo | SYNONYMOUS_CODING | |
| SBS | Chr2 | 18742230 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 18835626 | A-T | Homo | INTERGENIC | |
| SBS | Chr2 | 36609322 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 5197390 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 32726748 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 1500747 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 8853209 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 17220410 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 25108713 | A-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake04g168700 |
| SBS | Chr4 | 28687386 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 3559270 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 11157391 | A-C | Homo | INTRON | |
| SBS | Chr5 | 15994890 | G-C | Homo | INTERGENIC | |
| SBS | Chr6 | 2565382 | A-G | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr6 | 5230303 | T-C | Homo | INTERGENIC | |
| SBS | Chr6 | 17246205 | T-G | Homo | INTERGENIC | |
| SBS | Chr6 | 25183451 | A-T | Homo | INTERGENIC | |
| SBS | Chr7 | 4841753 | G-C | Homo | INTERGENIC | |
| SBS | Chr7 | 6729906 | A-T | Homo | INTRON | |
| SBS | Chr7 | 19447749 | A-T | Homo | INTERGENIC | |
| SBS | Chr8 | 3500576 | T-C | Homo | INTERGENIC | |
| SBS | Chr9 | 7433572 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 16473898 | C-A | Homo | INTERGENIC | |
| SBS | Chr9 | 16473899 | A-T | Homo | INTERGENIC | |
| SBS | Chr10 | 5485454 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 22105966 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 89301 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 3034093 | C-T | Hetero | INTRON | |
| SBS | Chr12 | 3745269 | C-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 5612048 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 8650149 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 13902592 | C-T | Hetero | INTERGENIC |
Deletions: 19
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 3323888 | 3323893 | 5 | |
| Deletion | Chr11 | 3917990 | 3917999 | 9 | |
| Deletion | Chr9 | 4001769 | 4001774 | 5 | |
| Deletion | Chr5 | 8054119 | 8054131 | 12 | |
| Deletion | Chr4 | 8796169 | 8796172 | 3 | |
| Deletion | Chr5 | 12638258 | 12638259 | 1 | |
| Deletion | Chr11 | 12750842 | 12750857 | 15 | |
| Deletion | Chr3 | 15445399 | 15445400 | 1 | |
| Deletion | Chr8 | 15610331 | 15610332 | 1 | |
| Deletion | Chr5 | 16367821 | 16367822 | 1 | |
| Deletion | Chr3 | 19027667 | 19027672 | 5 | |
| Deletion | Chr2 | 19489317 | 19489318 | 1 | |
| Deletion | Chr2 | 21425001 | 21458000 | 32999 | 3 |
| Deletion | Chr12 | 22161539 | 22161540 | 1 | |
| Deletion | Chr8 | 22908001 | 23138000 | 229999 | 23 |
| Deletion | Chr6 | 23028881 | 23028883 | 2 | |
| Deletion | Chr12 | 24522616 | 24522617 | 1 | OsKitaake12g198000 |
| Deletion | Chr6 | 25394001 | 25426000 | 31999 | |
| Deletion | Chr2 | 32268694 | 32268695 | 1 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 6260186 | 6260189 | 2 | |
| Insertion | Chr1 | 9765307 | 9765311 | 3 | |
| Insertion | Chr11 | 9567901 | 9567905 | 3 |
Translocations: 5
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 3541452 | Chr8 | 2659334 | |
| Translocation | Chr10 | 4973706 | Chr6 | 25397787 | |
| Translocation | Chr10 | 4973735 | Chr1 | 6702809 | |
| Translocation | Chr10 | 4973922 | Chr1 | 6702796 | |
| Translocation | Chr9 | 18320602 | Chr1 | 6702283 |