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Mutant Information

Mutant Name	FN_955-1 [Download]
Generation	M3
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN_955-1 Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9148919	G-A	Homo	UTR_3_PRIME
SBS	Chr1	12965862	T-C	Homo	INTERGENIC
SBS	Chr1	26005357	T-A	Homo	INTERGENIC
SBS	Chr1	28898227	G-A	Homo	INTRON
SBS	Chr1	34788582	A-T	Hetero	INTERGENIC
SBS	Chr4	4486410	T-A	Homo	INTERGENIC
SBS	Chr4	6617893	A-C	Hetero	INTERGENIC
SBS	Chr4	11302896	G-T	Homo	INTERGENIC
SBS	Chr4	29678933	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g228000
SBS	Chr5	5908674	C-A	Homo	INTERGENIC
SBS	Chr5	7345412	A-G	Homo	INTERGENIC
SBS	Chr5	11405728	A-T	Homo	INTERGENIC
SBS	Chr6	5518589	A-G	Homo	INTERGENIC
SBS	Chr6	6048505	T-A	Homo	INTERGENIC
SBS	Chr6	12686862	C-T	Homo	INTRON
SBS	Chr6	17646993	G-A	Homo	INTERGENIC
SBS	Chr6	17778597	G-A	Homo	INTERGENIC
SBS	Chr7	21845299	G-A	Homo	INTERGENIC
SBS	Chr8	24116364	C-T	Homo	INTERGENIC
SBS	Chr8	26559643	G-A	Hetero	STOP_GAINED	OsKitaake08g213600
SBS	Chr8	28719123	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g246500
SBS	Chr8	28719124	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g246500
SBS	Chr9	8314961	C-T	Homo	INTERGENIC
SBS	Chr9	20488557	T-G	Hetero	START_GAINED
SBS	Chr9	20672845	G-A	Hetero	INTERGENIC
SBS	Chr10	7819072	G-C	Homo	INTERGENIC
SBS	Chr10	9024311	G-A	Homo	INTERGENIC
SBS	Chr10	19650831	G-A	Hetero	INTERGENIC
SBS	Chr10	20606538	T-C	Hetero	INTERGENIC
SBS	Chr10	20606539	G-A	Hetero	INTERGENIC
SBS	Chr11	17128981	G-A	Homo	INTERGENIC
SBS	Chr12	10488262	A-C	Homo	INTERGENIC
SBS	Chr12	15183355	C-T	Hetero	INTERGENIC
SBS	Chr12	18766028	C-A	Homo	INTERGENIC

Deletions: 24

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	894696	894697	1
Deletion	Chr3	3947402	3947404	2
Deletion	Chr4	5128957	5128969	12	OsKitaake04g024600
Deletion	Chr12	5267991	5267997	6
Deletion	Chr2	9515120	9515121	1
Deletion	Chr2	9916275	9916296	21
Deletion	Chr5	11685190	11685191	1
Deletion	Chr8	12626653	12626655	2
Deletion	Chr6	14011001	14023000	11999	OsKitaake06g146000
Deletion	Chr1	15146587	15146595	8
Deletion	Chr8	15147917	15147936	19
Deletion	Chr12	16409386	16409397	11
Deletion	Chr2	16445399	16445400	1	OsKitaake02g168400
Deletion	Chr1	16556664	16556667	3
Deletion	Chr1	17625089	17625093	4
Deletion	Chr2	18362384	18362386	2
Deletion	Chr2	18975001	19329000	353999	35
Deletion	Chr3	22625239	22625242	3
Deletion	Chr3	22664052	22664058	6
Deletion	Chr12	24242660	24242661	1
Deletion	Chr8	25307780	25307787	7
Deletion	Chr1	25721387	25721393	6
Deletion	Chr1	28655769	28655783	14	OsKitaake01g277900
Deletion	Chr1	37760437	37760447	10

Insertions: 4

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr1	2497159	2497166	6
Insertion	Chr3	2131756	2131759	2
Insertion	Chr5	16007763	16007766	2
Insertion	Chr11	13176209	13176211	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	18983006	19367992	OsKitaake02g189600
Inversion	Chr2	19328580	19367994	2

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr2	7488	Chr1	31768985
Translocation	Chr2	7492	Chr1	31770854