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| Mutant Information |
|---|
| Mutant Name | FN_N1-116-1 [Download] |
| Generation | M3 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN_N1-116-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 38
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 3350258 | T-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 11186793 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 37913859 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 13587403 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 14230304 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 2594635 | A-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 9952397 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 33935737 | A-G | Homo | SPLICE_SITE_REGION | |
| SBS | Chr5 | 4522771 | G-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake05g052500 |
| SBS | Chr5 | 12684833 | T-C | Homo | INTERGENIC | |
| SBS | Chr5 | 19267009 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 27728076 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 4695920 | T-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 6384453 | G-A | Homo | INTRON | |
| SBS | Chr6 | 15171656 | A-G | Homo | INTERGENIC | |
| SBS | Chr6 | 21350062 | T-A | Homo | INTERGENIC | |
| SBS | Chr7 | 21180123 | G-C | Homo | INTERGENIC | |
| SBS | Chr7 | 22996143 | T-A | Homo | INTERGENIC | |
| SBS | Chr7 | 22996144 | A-T | Homo | INTERGENIC | |
| SBS | Chr7 | 28693133 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 10224834 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 27468356 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 3273735 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 4589416 | T-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 8359148 | T-C | Homo | INTERGENIC | |
| SBS | Chr10 | 2558603 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 7377468 | T-A | Hetero | INTRON | |
| SBS | Chr10 | 13132220 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 14165915 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 17744027 | A-C | Homo | INTERGENIC | |
| SBS | Chr11 | 13289932 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 19554680 | C-T | Homo | INTRON | |
| SBS | Chr11 | 21755031 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 8323677 | C-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g086100 |
| SBS | Chr12 | 13841853 | T-C | Homo | INTERGENIC | |
| SBS | Chr12 | 14478575 | T-C | Homo | INTERGENIC | |
| SBS | Chr12 | 21790118 | C-A | Homo | INTERGENIC | |
| SBS | Chr12 | 23242967 | C-T | Homo | INTRON |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 1234235 | 1234238 | 3 | |
| Deletion | Chr3 | 4287737 | 4287742 | 5 | OsKitaake03g061500 |
| Deletion | Chr3 | 4444213 | 4444215 | 2 | |
| Deletion | Chr3 | 4661999 | 4662000 | 1 | |
| Deletion | Chr6 | 7880896 | 7880900 | 4 | |
| Deletion | Chr7 | 8665932 | 8665939 | 7 | |
| Deletion | Chr2 | 15076587 | 15076589 | 2 | |
| Deletion | Chr2 | 17335998 | 17336004 | 6 | |
| Deletion | Chr11 | 17894001 | 17906000 | 11999 | OsKitaake11g140200 |
| Deletion | Chr10 | 22740920 | 22740922 | 2 | |
| Deletion | Chr1 | 30762323 | 30762327 | 4 | |
| Deletion | Chr1 | 42039255 | 42039256 | 1 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 10291292 | 10291295 | 2 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 36046749 | 36778896 | OsKitaake03g410200 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 3483280 | Chr9 | 8681116 | |
| Translocation | Chr10 | 3483318 | Chr9 | 8681288 | |
| Translocation | Chr9 | 8680114 | Chr4 | 36885488 | |
| Translocation | Chr9 | 8681019 | Chr4 | 36885486 |