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Mutant Information

Mutant Name	FN_N1-119-1 [Download]
Generation	M3
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN_N1-119-1 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12386348 A-G Homo INTERGENIC
SBS Chr1 17455931 C-T Homo INTERGENIC
SBS Chr1 17455932 T-G Homo INTERGENIC
SBS Chr1 22014681 C-A Homo INTERGENIC
SBS Chr1 29398324 A-G Hetero INTERGENIC
SBS Chr1 30265150 A-T Hetero SYNONYMOUS_CODING
SBS Chr1 33273756 T-A Hetero INTERGENIC
SBS Chr1 44106786 C-A Hetero INTERGENIC
SBS Chr2 1753554 A-G Homo INTERGENIC
SBS Chr2 9287978 G-C Hetero INTERGENIC
SBS Chr2 16055793 A-G Homo UTR_3_PRIME
SBS Chr2 22194895 C-T Hetero INTERGENIC
SBS Chr3 16456174 G-A Homo INTERGENIC
SBS Chr3 19052908 T-A Homo INTRON
SBS Chr3 25153451 C-T Homo INTERGENIC
SBS Chr4 7389783 C-T Hetero INTERGENIC
SBS Chr4 13190537 G-A Hetero INTERGENIC
SBS Chr4 18493470 G-A Hetero INTERGENIC
SBS Chr4 35584738 G-A Homo INTERGENIC
SBS Chr4 35584739 G-T Homo INTERGENIC
SBS Chr6 11314885 A-T Hetero INTERGENIC
SBS Chr6 24255711 T-A Hetero INTERGENIC
SBS Chr6 27073655 A-G Hetero INTRON
SBS Chr6 29411454 G-A Hetero INTERGENIC
SBS Chr6 30144426 G-A Hetero UTR_3_PRIME
SBS Chr7 9639510 T-C Hetero INTERGENIC
SBS Chr7 11578779 G-T Homo INTERGENIC
SBS Chr8 22967916 G-T Hetero INTERGENIC
SBS Chr9 13554264 C-T Homo INTERGENIC
SBS Chr10 2349233 G-T Hetero INTRON
SBS Chr10 5102958 G-C Hetero INTERGENIC
SBS Chr10 7475956 T-A Hetero INTERGENIC
SBS Chr10 16527681 T-A Homo INTERGENIC
SBS Chr11 10656167 G-A Homo INTRON
SBS Chr11 14673120 G-T Hetero INTERGENIC
SBS Chr12 6099409 G-C Homo INTERGENIC
SBS Chr12 26086475 A-G Homo INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 8456384 8456387 3
Deletion Chr11 10603175 10603176 1
Deletion Chr4 12505170 12505172 2
Deletion Chr7 13722001 13729000 6999
Deletion Chr2 19436001 19463000 26999 3
Deletion Chr2 21873510 21873520 10
Deletion Chr7 24220673 24220676 3
Deletion Chr5 24552958 24552968 10
Deletion Chr3 25529057 25529062 5
Deletion Chr2 28937670 28937675 5

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 7738469 7738472 2
Insertion Chr7 19339862 19339865 2
Insertion Chr12 21253565 21253568 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 4898126 Chr8 27996226
Translocation Chr10 4898134 Chr8 28023964

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12386348	A-G	Homo	INTERGENIC
SBS	Chr1	17455931	C-T	Homo	INTERGENIC
SBS	Chr1	17455932	T-G	Homo	INTERGENIC
SBS	Chr1	22014681	C-A	Homo	INTERGENIC
SBS	Chr1	29398324	A-G	Hetero	INTERGENIC
SBS	Chr1	30265150	A-T	Hetero	SYNONYMOUS_CODING
SBS	Chr1	33273756	T-A	Hetero	INTERGENIC
SBS	Chr1	44106786	C-A	Hetero	INTERGENIC
SBS	Chr2	1753554	A-G	Homo	INTERGENIC
SBS	Chr2	9287978	G-C	Hetero	INTERGENIC
SBS	Chr2	16055793	A-G	Homo	UTR_3_PRIME
SBS	Chr2	22194895	C-T	Hetero	INTERGENIC
SBS	Chr3	16456174	G-A	Homo	INTERGENIC
SBS	Chr3	19052908	T-A	Homo	INTRON
SBS	Chr3	25153451	C-T	Homo	INTERGENIC
SBS	Chr4	7389783	C-T	Hetero	INTERGENIC
SBS	Chr4	13190537	G-A	Hetero	INTERGENIC
SBS	Chr4	18493470	G-A	Hetero	INTERGENIC
SBS	Chr4	35584738	G-A	Homo	INTERGENIC
SBS	Chr4	35584739	G-T	Homo	INTERGENIC
SBS	Chr6	11314885	A-T	Hetero	INTERGENIC
SBS	Chr6	24255711	T-A	Hetero	INTERGENIC
SBS	Chr6	27073655	A-G	Hetero	INTRON
SBS	Chr6	29411454	G-A	Hetero	INTERGENIC
SBS	Chr6	30144426	G-A	Hetero	UTR_3_PRIME
SBS	Chr7	9639510	T-C	Hetero	INTERGENIC
SBS	Chr7	11578779	G-T	Homo	INTERGENIC
SBS	Chr8	22967916	G-T	Hetero	INTERGENIC
SBS	Chr9	13554264	C-T	Homo	INTERGENIC
SBS	Chr10	2349233	G-T	Hetero	INTRON
SBS	Chr10	5102958	G-C	Hetero	INTERGENIC
SBS	Chr10	7475956	T-A	Hetero	INTERGENIC
SBS	Chr10	16527681	T-A	Homo	INTERGENIC
SBS	Chr11	10656167	G-A	Homo	INTRON
SBS	Chr11	14673120	G-T	Hetero	INTERGENIC
SBS	Chr12	6099409	G-C	Homo	INTERGENIC
SBS	Chr12	26086475	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	8456384	8456387	3
Deletion	Chr11	10603175	10603176	1
Deletion	Chr4	12505170	12505172	2
Deletion	Chr7	13722001	13729000	6999
Deletion	Chr2	19436001	19463000	26999	3
Deletion	Chr2	21873510	21873520	10
Deletion	Chr7	24220673	24220676	3
Deletion	Chr5	24552958	24552968	10
Deletion	Chr3	25529057	25529062	5
Deletion	Chr2	28937670	28937675	5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	4898126	Chr8	27996226
Translocation	Chr10	4898134	Chr8	28023964

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes