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Mutant Information

Mutant Name	FN_N1-130-1 [Download]
Generation	M3
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN_N1-130-1 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 47

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2214269 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g027800
SBS Chr1 2946637 C-A Hetero INTERGENIC
SBS Chr1 2946956 G-C Hetero INTERGENIC
SBS Chr1 3346605 C-G Hetero INTERGENIC
SBS Chr1 15312359 A-G Hetero INTERGENIC
SBS Chr1 21168848 T-A Hetero INTERGENIC
SBS Chr1 38756332 C-T Homo INTERGENIC
SBS Chr2 11863792 G-T Homo STOP_GAINED OsKitaake02g135400
SBS Chr2 13717535 C-G Hetero INTERGENIC
SBS Chr2 21892968 C-A Homo INTERGENIC
SBS Chr2 35406460 G-A Homo UTR_3_PRIME
SBS Chr3 9160867 G-T Hetero SPLICE_SITE_REGION
SBS Chr3 11919582 G-A Hetero INTERGENIC
SBS Chr3 26369379 G-C Hetero INTERGENIC
SBS Chr3 32963366 G-T Homo INTRON
SBS Chr4 3218938 T-C Homo SYNONYMOUS_CODING
SBS Chr4 18462295 C-T Homo INTERGENIC
SBS Chr5 4264530 A-T Hetero INTERGENIC
SBS Chr5 5913345 A-T Hetero INTERGENIC
SBS Chr5 15422821 A-T Hetero INTERGENIC
SBS Chr5 21170378 C-T Homo INTRON
SBS Chr5 28330284 G-A Hetero INTERGENIC
SBS Chr6 3167739 G-A Homo INTERGENIC
SBS Chr6 14513426 C-T Hetero INTERGENIC
SBS Chr6 19559004 T-C Homo INTERGENIC
SBS Chr6 19832034 C-T Homo INTERGENIC
SBS Chr7 2449133 T-G Homo INTERGENIC
SBS Chr7 8683026 C-T Hetero INTERGENIC
SBS Chr7 29336220 G-A Homo NON_SYNONYMOUS_CODING OsKitaake07g281900
SBS Chr8 7392145 C-T Homo INTERGENIC
SBS Chr8 10630013 A-G Hetero INTERGENIC
SBS Chr8 13444228 T-G Hetero INTERGENIC
SBS Chr8 18212230 G-A Homo INTERGENIC
SBS Chr8 20728392 C-T Hetero INTERGENIC
SBS Chr9 3615100 T-A Hetero INTERGENIC
SBS Chr9 5616124 C-T Hetero INTERGENIC
SBS Chr9 17930634 C-T Hetero INTERGENIC
SBS Chr11 10965845 G-T Hetero INTERGENIC
SBS Chr11 12171312 C-G Hetero INTERGENIC
SBS Chr11 13731839 C-T Hetero INTERGENIC
SBS Chr11 15621755 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake11g125600
SBS Chr11 15643416 A-G Hetero INTERGENIC
SBS Chr11 15680135 A-G Hetero INTERGENIC
SBS Chr11 15754393 G-T Hetero INTERGENIC
SBS Chr11 15766914 G-T Hetero INTERGENIC
SBS Chr12 1152662 C-T Homo INTERGENIC
SBS Chr12 13775712 C-A Hetero INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 5471904 5471906 2
Deletion Chr5 6645542 6645544 2
Deletion Chr9 11952078 11952080 2
Deletion Chr3 20920027 20920034 7
Deletion Chr5 26403642 26403663 21
Deletion Chr2 29885219 29885220 1 OsKitaake02g302600
Deletion Chr3 32002955 32002974 19
Deletion Chr1 39234058 39234060 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 19257882 19257885 2
Insertion Chr8 9227330 9227333 2

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 17925130 Chr3 35224030
Translocation Chr9 17925134 Chr3 14795487 OsKitaake03g192900
Translocation Chr9 17931319 Chr3 14795501 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2214269	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g027800
SBS	Chr1	2946637	C-A	Hetero	INTERGENIC
SBS	Chr1	2946956	G-C	Hetero	INTERGENIC
SBS	Chr1	3346605	C-G	Hetero	INTERGENIC
SBS	Chr1	15312359	A-G	Hetero	INTERGENIC
SBS	Chr1	21168848	T-A	Hetero	INTERGENIC
SBS	Chr1	38756332	C-T	Homo	INTERGENIC
SBS	Chr2	11863792	G-T	Homo	STOP_GAINED	OsKitaake02g135400
SBS	Chr2	13717535	C-G	Hetero	INTERGENIC
SBS	Chr2	21892968	C-A	Homo	INTERGENIC
SBS	Chr2	35406460	G-A	Homo	UTR_3_PRIME
SBS	Chr3	9160867	G-T	Hetero	SPLICE_SITE_REGION
SBS	Chr3	11919582	G-A	Hetero	INTERGENIC
SBS	Chr3	26369379	G-C	Hetero	INTERGENIC
SBS	Chr3	32963366	G-T	Homo	INTRON
SBS	Chr4	3218938	T-C	Homo	SYNONYMOUS_CODING
SBS	Chr4	18462295	C-T	Homo	INTERGENIC
SBS	Chr5	4264530	A-T	Hetero	INTERGENIC
SBS	Chr5	5913345	A-T	Hetero	INTERGENIC
SBS	Chr5	15422821	A-T	Hetero	INTERGENIC
SBS	Chr5	21170378	C-T	Homo	INTRON
SBS	Chr5	28330284	G-A	Hetero	INTERGENIC
SBS	Chr6	3167739	G-A	Homo	INTERGENIC
SBS	Chr6	14513426	C-T	Hetero	INTERGENIC
SBS	Chr6	19559004	T-C	Homo	INTERGENIC
SBS	Chr6	19832034	C-T	Homo	INTERGENIC
SBS	Chr7	2449133	T-G	Homo	INTERGENIC
SBS	Chr7	8683026	C-T	Hetero	INTERGENIC
SBS	Chr7	29336220	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g281900
SBS	Chr8	7392145	C-T	Homo	INTERGENIC
SBS	Chr8	10630013	A-G	Hetero	INTERGENIC
SBS	Chr8	13444228	T-G	Hetero	INTERGENIC
SBS	Chr8	18212230	G-A	Homo	INTERGENIC
SBS	Chr8	20728392	C-T	Hetero	INTERGENIC
SBS	Chr9	3615100	T-A	Hetero	INTERGENIC
SBS	Chr9	5616124	C-T	Hetero	INTERGENIC
SBS	Chr9	17930634	C-T	Hetero	INTERGENIC
SBS	Chr11	10965845	G-T	Hetero	INTERGENIC
SBS	Chr11	12171312	C-G	Hetero	INTERGENIC
SBS	Chr11	13731839	C-T	Hetero	INTERGENIC
SBS	Chr11	15621755	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g125600
SBS	Chr11	15643416	A-G	Hetero	INTERGENIC
SBS	Chr11	15680135	A-G	Hetero	INTERGENIC
SBS	Chr11	15754393	G-T	Hetero	INTERGENIC
SBS	Chr11	15766914	G-T	Hetero	INTERGENIC
SBS	Chr12	1152662	C-T	Homo	INTERGENIC
SBS	Chr12	13775712	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	5471904	5471906	2
Deletion	Chr5	6645542	6645544	2
Deletion	Chr9	11952078	11952080	2
Deletion	Chr3	20920027	20920034	7
Deletion	Chr5	26403642	26403663	21
Deletion	Chr2	29885219	29885220	1	OsKitaake02g302600
Deletion	Chr3	32002955	32002974	19
Deletion	Chr1	39234058	39234060	2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	17925130	Chr3	35224030
Translocation	Chr9	17925134	Chr3	14795487	OsKitaake03g192900
Translocation	Chr9	17931319	Chr3	14795501	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes