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Mutant Information

Mutant Name	FN_N1-150-1 [Download]
Generation	M3
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN_N1-150-1 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8294157 G-A Hetero INTERGENIC
SBS Chr1 27767255 C-T Homo INTERGENIC
SBS Chr1 41410829 G-A Homo INTERGENIC
SBS Chr2 9455517 G-T Hetero INTERGENIC
SBS Chr2 11852179 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g135300
SBS Chr2 12026762 G-C Hetero INTERGENIC
SBS Chr2 12634411 T-C Hetero INTERGENIC
SBS Chr2 18534901 T-G Hetero INTERGENIC
SBS Chr2 23685296 C-T Homo INTRON
SBS Chr2 25260153 C-T Homo INTERGENIC
SBS Chr2 29219823 A-T Homo UTR_5_PRIME
SBS Chr2 31602621 G-T Hetero INTERGENIC
SBS Chr3 6975231 C-T Homo INTERGENIC
SBS Chr3 19875285 G-T Homo INTERGENIC
SBS Chr3 23153533 C-G Homo INTERGENIC
SBS Chr3 24368680 A-T Homo INTERGENIC
SBS Chr4 766906 G-T Homo INTERGENIC
SBS Chr4 1312910 G-C Homo INTERGENIC
SBS Chr4 1598069 G-C Hetero INTERGENIC
SBS Chr4 2022121 A-G Homo INTERGENIC
SBS Chr4 5625410 C-A Homo INTERGENIC
SBS Chr4 18806019 G-A Homo INTERGENIC
SBS Chr4 24129310 C-T Homo INTERGENIC
SBS Chr4 27748719 G-C Hetero INTRON
SBS Chr5 12615781 T-C Homo INTERGENIC
SBS Chr5 13526493 G-A Homo INTRON
SBS Chr5 13720098 C-T Homo INTERGENIC
SBS Chr6 9356609 G-A Homo INTERGENIC
SBS Chr6 12584605 A-T Homo INTERGENIC
SBS Chr6 15201156 C-T Homo INTERGENIC
SBS Chr7 10679623 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g101900
SBS Chr7 12373985 G-C Hetero INTERGENIC
SBS Chr7 17216840 G-A Homo INTERGENIC
SBS Chr8 14773514 G-A Hetero INTERGENIC
SBS Chr8 19434855 G-T Hetero INTERGENIC
SBS Chr8 27482799 T-A Homo INTRON
SBS Chr9 9729380 G-T Homo INTERGENIC
SBS Chr9 17158903 T-A Hetero INTERGENIC
SBS Chr10 3450101 C-T Hetero INTERGENIC
SBS Chr10 6390591 T-G Homo INTERGENIC
SBS Chr10 15655096 C-A Homo INTERGENIC
SBS Chr11 18482674 T-A Homo INTRON

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 699896 699898 2
Deletion Chr7 1156712 1156722 10
Deletion Chr1 3500707 3500708 1
Deletion Chr9 8123527 8123536 9
Deletion Chr10 11249451 11249453 2
Deletion Chr11 14814770 14814774 4
Deletion Chr6 17049061 17049066 5
Deletion Chr7 18055001 18072000 16999
Deletion Chr12 19905938 19905940 2
Deletion Chr7 24795555 24795557 2
Deletion Chr1 41700749 41700752 3

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 7795602 7795605 2
Insertion Chr4 12970374 12970377 2
Insertion Chr5 18486759 18486762 2
Insertion Chr9 2057740 2057743 2
Insertion Chr11 11876774 11876777 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 17757414 17766615 OsKitaake05g136600
Inversion Chr5 17757417 17766727 OsKitaake05g136600

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 9886603 Chr5 12779561
Translocation Chr11 18363682 Chr8 9891391
Translocation Chr8 19037142 Chr2 33664340 OsKitaake02g348100
Translocation Chr8 19037155 Chr2 33665461 OsKitaake02g348100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8294157	G-A	Hetero	INTERGENIC
SBS	Chr1	27767255	C-T	Homo	INTERGENIC
SBS	Chr1	41410829	G-A	Homo	INTERGENIC
SBS	Chr2	9455517	G-T	Hetero	INTERGENIC
SBS	Chr2	11852179	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g135300
SBS	Chr2	12026762	G-C	Hetero	INTERGENIC
SBS	Chr2	12634411	T-C	Hetero	INTERGENIC
SBS	Chr2	18534901	T-G	Hetero	INTERGENIC
SBS	Chr2	23685296	C-T	Homo	INTRON
SBS	Chr2	25260153	C-T	Homo	INTERGENIC
SBS	Chr2	29219823	A-T	Homo	UTR_5_PRIME
SBS	Chr2	31602621	G-T	Hetero	INTERGENIC
SBS	Chr3	6975231	C-T	Homo	INTERGENIC
SBS	Chr3	19875285	G-T	Homo	INTERGENIC
SBS	Chr3	23153533	C-G	Homo	INTERGENIC
SBS	Chr3	24368680	A-T	Homo	INTERGENIC
SBS	Chr4	766906	G-T	Homo	INTERGENIC
SBS	Chr4	1312910	G-C	Homo	INTERGENIC
SBS	Chr4	1598069	G-C	Hetero	INTERGENIC
SBS	Chr4	2022121	A-G	Homo	INTERGENIC
SBS	Chr4	5625410	C-A	Homo	INTERGENIC
SBS	Chr4	18806019	G-A	Homo	INTERGENIC
SBS	Chr4	24129310	C-T	Homo	INTERGENIC
SBS	Chr4	27748719	G-C	Hetero	INTRON
SBS	Chr5	12615781	T-C	Homo	INTERGENIC
SBS	Chr5	13526493	G-A	Homo	INTRON
SBS	Chr5	13720098	C-T	Homo	INTERGENIC
SBS	Chr6	9356609	G-A	Homo	INTERGENIC
SBS	Chr6	12584605	A-T	Homo	INTERGENIC
SBS	Chr6	15201156	C-T	Homo	INTERGENIC
SBS	Chr7	10679623	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g101900
SBS	Chr7	12373985	G-C	Hetero	INTERGENIC
SBS	Chr7	17216840	G-A	Homo	INTERGENIC
SBS	Chr8	14773514	G-A	Hetero	INTERGENIC
SBS	Chr8	19434855	G-T	Hetero	INTERGENIC
SBS	Chr8	27482799	T-A	Homo	INTRON
SBS	Chr9	9729380	G-T	Homo	INTERGENIC
SBS	Chr9	17158903	T-A	Hetero	INTERGENIC
SBS	Chr10	3450101	C-T	Hetero	INTERGENIC
SBS	Chr10	6390591	T-G	Homo	INTERGENIC
SBS	Chr10	15655096	C-A	Homo	INTERGENIC
SBS	Chr11	18482674	T-A	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	699896	699898	2
Deletion	Chr7	1156712	1156722	10
Deletion	Chr1	3500707	3500708	1
Deletion	Chr9	8123527	8123536	9
Deletion	Chr10	11249451	11249453	2
Deletion	Chr11	14814770	14814774	4
Deletion	Chr6	17049061	17049066	5
Deletion	Chr7	18055001	18072000	16999
Deletion	Chr12	19905938	19905940	2
Deletion	Chr7	24795555	24795557	2
Deletion	Chr1	41700749	41700752	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	17757414	17766615	OsKitaake05g136600
Inversion	Chr5	17757417	17766727	OsKitaake05g136600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes