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Mutant Information

Mutant Name	FN_N1-169-1 [Download]
Generation	M3
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN_N1-169-1 Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 45

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14560398	C-T	Hetero	INTRON
SBS	Chr1	15352309	C-G	Hetero	INTERGENIC
SBS	Chr1	16154904	C-T	Hetero	INTERGENIC
SBS	Chr1	20476104	C-G	Hetero	INTERGENIC
SBS	Chr1	26085850	G-A	Homo	INTERGENIC
SBS	Chr1	29427413	A-T	Homo	INTERGENIC
SBS	Chr1	32694971	A-T	Homo	INTERGENIC
SBS	Chr1	42597663	C-T	Hetero	INTERGENIC
SBS	Chr2	17777239	G-A	Hetero	INTERGENIC
SBS	Chr2	27643406	C-T	Hetero	INTERGENIC
SBS	Chr2	30458717	A-T	Homo	SYNONYMOUS_CODING
SBS	Chr3	12967649	A-T	Hetero	INTRON
SBS	Chr3	27071850	G-A	Hetero	INTERGENIC
SBS	Chr3	32010501	T-A	Homo	INTERGENIC
SBS	Chr4	5010429	G-T	Hetero	INTERGENIC
SBS	Chr4	7539500	A-G	Homo	INTERGENIC
SBS	Chr4	17012507	A-C	Hetero	INTERGENIC
SBS	Chr4	31659425	G-A	Homo	UTR_3_PRIME
SBS	Chr4	31659426	C-A	Homo	UTR_3_PRIME
SBS	Chr5	3136458	A-T	Homo	INTERGENIC
SBS	Chr5	27736468	C-T	Homo	INTRON
SBS	Chr5	27736469	G-A	Homo	INTRON
SBS	Chr6	10348527	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g117200
SBS	Chr6	10840802	C-A	Hetero	INTERGENIC
SBS	Chr6	12955525	T-A	Hetero	INTERGENIC
SBS	Chr6	20327187	G-A	Homo	INTRON
SBS	Chr7	14317356	C-T	Hetero	INTRON
SBS	Chr7	14579696	G-A	Hetero	INTERGENIC
SBS	Chr7	15285859	T-A	Hetero	INTERGENIC
SBS	Chr8	25977114	A-T	Homo	INTERGENIC
SBS	Chr9	5484440	T-A	Homo	INTERGENIC
SBS	Chr9	10912260	A-T	Hetero	INTERGENIC
SBS	Chr10	1019831	T-A	Hetero	INTERGENIC
SBS	Chr10	5336431	C-T	Homo	INTERGENIC
SBS	Chr10	19567459	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr10	19580590	C-G	Homo	UTR_3_PRIME
SBS	Chr11	3872940	C-A	Hetero	INTERGENIC
SBS	Chr11	5396582	T-A	Homo	INTERGENIC
SBS	Chr11	10757463	C-A	Homo	INTERGENIC
SBS	Chr11	16125326	C-A	Homo	INTERGENIC
SBS	Chr11	18997349	G-C	Hetero	INTERGENIC
SBS	Chr11	26482651	G-A	Homo	INTERGENIC
SBS	Chr12	11827347	A-T	Homo	INTERGENIC
SBS	Chr12	14743116	A-T	Homo	INTERGENIC
SBS	Chr12	15515046	A-T	Homo	INTERGENIC

Deletions: 8

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	20564524	20564534	10
Deletion	Chr6	21954658	21954659	1
Deletion	Chr5	23239191	23239201	10
Deletion	Chr5	25759113	25759115	2
Deletion	Chr8	25945732	25945747	15
Deletion	Chr2	33235848	33235856	8
Deletion	Chr3	35517001	35526000	8999
Deletion	Chr1	40156569	40156575	6

Insertions: 3

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr4	1061702	1061705	2
Insertion	Chr7	17400373	17400376	2
Insertion	Chr11	18045149	18045154	4

Inversions: 8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	4094109	4176193
Inversion	Chr8	4094114	4176195
Inversion	Chr2	7350343	7583844	2
Inversion	Chr2	7350687	7679619	OsKitaake02g100500
Inversion	Chr2	7583954	7679596	2
Inversion	Chr2	7584070	7666802	OsKitaake02g099900
Inversion	Chr1	33759873	34048605	OsKitaake01g350400
Inversion	Chr1	33831528	34048604	2

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	6915778	Chr2	7350679	OsKitaake02g098100
Translocation	Chr4	25617951	Chr2	7666795
Translocation	Chr4	25617963	Chr2	7583858	OsKitaake02g099900

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