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| Mutant Information |
|---|
| Mutant Name | FN_N1-202-3 [Download] |
| Generation | M3 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN_N1-202-3 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1582624 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 1582625 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 17301361 | C-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 19272627 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 12947538 | A-T | Homo | INTERGENIC | |
| SBS | Chr2 | 16448485 | C-A | Homo | INTERGENIC | |
| SBS | Chr2 | 27198750 | A-G | Homo | INTERGENIC | |
| SBS | Chr3 | 13742989 | C-A | Homo | INTERGENIC | |
| SBS | Chr3 | 13742990 | T-A | Homo | INTERGENIC | |
| SBS | Chr3 | 22017148 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 34536911 | C-G | Hetero | INTRON | |
| SBS | Chr4 | 7038139 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 7038140 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 11790440 | C-A | Homo | INTERGENIC | |
| SBS | Chr4 | 26690518 | A-T | Hetero | INTRON | |
| SBS | Chr4 | 30616134 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 12571044 | G-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake06g134200 |
| SBS | Chr6 | 26395855 | C-T | Hetero | INTRON | |
| SBS | Chr7 | 8561923 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 12277740 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 13888949 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 15321189 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 18864556 | A-T | Homo | INTERGENIC | |
| SBS | Chr7 | 20539278 | A-G | Homo | INTERGENIC | |
| SBS | Chr8 | 5830983 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 6261352 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 16775455 | T-A | Hetero | INTRON | |
| SBS | Chr11 | 18226486 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 14862260 | C-T | Hetero | INTERGENIC |
Deletions: 16
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 2857130 | 2857135 | 5 | |
| Deletion | Chr8 | 3308733 | 3308737 | 4 | |
| Deletion | Chr8 | 3309244 | 3309246 | 2 | |
| Deletion | Chr7 | 7148001 | 7169000 | 20999 | 2 |
| Deletion | Chr6 | 14349365 | 14349370 | 5 | |
| Deletion | Chr2 | 16815958 | 16815963 | 5 | |
| Deletion | Chr5 | 18144782 | 18144783 | 1 | |
| Deletion | Chr12 | 18473485 | 18473489 | 4 | |
| Deletion | Chr4 | 19022971 | 19022975 | 4 | OsKitaake04g095700 |
| Deletion | Chr8 | 21857916 | 21857931 | 15 | |
| Deletion | Chr1 | 22152890 | 22152892 | 2 | |
| Deletion | Chr12 | 22338352 | 22338364 | 12 | |
| Deletion | Chr12 | 25329110 | 25329118 | 8 | |
| Deletion | Chr7 | 27445137 | 27445141 | 4 | |
| Deletion | Chr2 | 29670107 | 29670110 | 3 | |
| Deletion | Chr2 | 31934434 | 31934435 | 1 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 27157381 | 27157384 | 2 | |
| Insertion | Chr7 | 21603745 | 21603748 | 2 |