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Mutant Information

Mutant Name	FN_N1-213-1 [Download]
Generation	M3
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN_N1-213-1 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2188722 G-A Hetero INTERGENIC
SBS Chr1 4449926 G-T Homo INTERGENIC
SBS Chr1 9670019 C-T Hetero INTERGENIC
SBS Chr1 21396581 C-T Homo INTERGENIC
SBS Chr1 25130489 G-A Homo INTERGENIC
SBS Chr1 30157411 C-T Hetero INTERGENIC
SBS Chr1 31679911 G-A Hetero INTERGENIC
SBS Chr1 40160674 G-C Hetero INTERGENIC
SBS Chr2 9682944 C-T Homo INTERGENIC
SBS Chr2 32147610 G-A Homo INTERGENIC
SBS Chr2 35788732 A-T Homo INTERGENIC
SBS Chr3 20161240 T-C Homo INTERGENIC
SBS Chr3 33771296 G-T Homo INTERGENIC
SBS Chr4 2904598 G-A Homo INTERGENIC
SBS Chr4 30984386 G-A Hetero INTERGENIC
SBS Chr5 7310925 A-G Hetero INTERGENIC
SBS Chr6 9240366 G-A Hetero INTERGENIC
SBS Chr6 14356520 C-A Hetero INTERGENIC
SBS Chr6 29237912 T-A Hetero INTERGENIC
SBS Chr6 29561070 A-T Hetero INTERGENIC
SBS Chr7 17345965 T-C Homo INTERGENIC
SBS Chr7 26006856 C-T Homo INTRON
SBS Chr8 1796473 G-A Hetero INTERGENIC
SBS Chr8 7743193 G-T Hetero INTERGENIC
SBS Chr9 11352456 A-G Homo INTERGENIC
SBS Chr9 15319184 C-A Hetero INTERGENIC
SBS Chr9 15829616 A-T Hetero INTERGENIC
SBS Chr10 5591304 C-T Hetero INTERGENIC
SBS Chr10 6037226 C-T Hetero INTERGENIC
SBS Chr10 12941568 G-A Hetero INTERGENIC
SBS Chr10 13514252 A-T Hetero INTERGENIC
SBS Chr11 19343584 C-T Hetero INTERGENIC
SBS Chr11 25492929 C-T Hetero INTERGENIC
SBS Chr11 26743997 G-C Hetero INTERGENIC
SBS Chr11 29385473 G-A Homo INTERGENIC
SBS Chr12 9533720 G-A Homo INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 471917 471921 4
Deletion Chr2 4556148 4556153 5
Deletion Chr5 8711908 8711909 1 OsKitaake05g082700
Deletion Chr11 8832016 8832018 2
Deletion Chr1 10684621 10684629 8
Deletion Chr9 15653633 15653642 9
Deletion Chr5 15940764 15940779 15
Deletion Chr9 16105507 16105509 2
Deletion Chr3 20134001 20161000 26999
Deletion Chr3 22407695 22407702 7

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 18310850 18310853 2
Insertion Chr3 28944102 28944105 2
Insertion Chr4 20024584 20024587 2
Insertion Chr6 9694948 9694951 2
Insertion Chr6 19135584 19135587 2
Insertion Chr12 4686426 4686429 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 1650341 1769074
Inversion Chr5 1650350 1769086
Inversion Chr3 20126364 20258987

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2188722	G-A	Hetero	INTERGENIC
SBS	Chr1	4449926	G-T	Homo	INTERGENIC
SBS	Chr1	9670019	C-T	Hetero	INTERGENIC
SBS	Chr1	21396581	C-T	Homo	INTERGENIC
SBS	Chr1	25130489	G-A	Homo	INTERGENIC
SBS	Chr1	30157411	C-T	Hetero	INTERGENIC
SBS	Chr1	31679911	G-A	Hetero	INTERGENIC
SBS	Chr1	40160674	G-C	Hetero	INTERGENIC
SBS	Chr2	9682944	C-T	Homo	INTERGENIC
SBS	Chr2	32147610	G-A	Homo	INTERGENIC
SBS	Chr2	35788732	A-T	Homo	INTERGENIC
SBS	Chr3	20161240	T-C	Homo	INTERGENIC
SBS	Chr3	33771296	G-T	Homo	INTERGENIC
SBS	Chr4	2904598	G-A	Homo	INTERGENIC
SBS	Chr4	30984386	G-A	Hetero	INTERGENIC
SBS	Chr5	7310925	A-G	Hetero	INTERGENIC
SBS	Chr6	9240366	G-A	Hetero	INTERGENIC
SBS	Chr6	14356520	C-A	Hetero	INTERGENIC
SBS	Chr6	29237912	T-A	Hetero	INTERGENIC
SBS	Chr6	29561070	A-T	Hetero	INTERGENIC
SBS	Chr7	17345965	T-C	Homo	INTERGENIC
SBS	Chr7	26006856	C-T	Homo	INTRON
SBS	Chr8	1796473	G-A	Hetero	INTERGENIC
SBS	Chr8	7743193	G-T	Hetero	INTERGENIC
SBS	Chr9	11352456	A-G	Homo	INTERGENIC
SBS	Chr9	15319184	C-A	Hetero	INTERGENIC
SBS	Chr9	15829616	A-T	Hetero	INTERGENIC
SBS	Chr10	5591304	C-T	Hetero	INTERGENIC
SBS	Chr10	6037226	C-T	Hetero	INTERGENIC
SBS	Chr10	12941568	G-A	Hetero	INTERGENIC
SBS	Chr10	13514252	A-T	Hetero	INTERGENIC
SBS	Chr11	19343584	C-T	Hetero	INTERGENIC
SBS	Chr11	25492929	C-T	Hetero	INTERGENIC
SBS	Chr11	26743997	G-C	Hetero	INTERGENIC
SBS	Chr11	29385473	G-A	Homo	INTERGENIC
SBS	Chr12	9533720	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	471917	471921	4
Deletion	Chr2	4556148	4556153	5
Deletion	Chr5	8711908	8711909	1	OsKitaake05g082700
Deletion	Chr11	8832016	8832018	2
Deletion	Chr1	10684621	10684629	8
Deletion	Chr9	15653633	15653642	9
Deletion	Chr5	15940764	15940779	15
Deletion	Chr9	16105507	16105509	2
Deletion	Chr3	20134001	20161000	26999
Deletion	Chr3	22407695	22407702	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	1650341	1769074
Inversion	Chr5	1650350	1769086
Inversion	Chr3	20126364	20258987

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes