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| Mutant Information |
|---|
| Mutant Name | FN_N1-220-1 [Download] |
| Generation | M3 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN_N1-220-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 27
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 18701955 | A-C | Homo | INTERGENIC | |
| SBS | Chr1 | 24556816 | A-T | Homo | UTR_3_PRIME | |
| SBS | Chr2 | 3674316 | G-C | Homo | INTERGENIC | |
| SBS | Chr2 | 6714852 | C-T | Hetero | INTRON | |
| SBS | Chr2 | 13021185 | A-G | Hetero | INTRON | |
| SBS | Chr3 | 3005281 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g042400 |
| SBS | Chr3 | 8520673 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr3 | 20019941 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 28564380 | C-A | Homo | INTRON | |
| SBS | Chr3 | 37182453 | G-A | Homo | UTR_5_PRIME | |
| SBS | Chr4 | 4798514 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 6620158 | T-A | Homo | INTERGENIC | |
| SBS | Chr5 | 27596419 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 29016404 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 15654689 | G-A | Hetero | INTRON | |
| SBS | Chr6 | 22178154 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 23425174 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 26592663 | C-G | Homo | INTRON | |
| SBS | Chr7 | 26618387 | A-G | Homo | INTERGENIC | |
| SBS | Chr8 | 13860835 | T-A | Homo | INTERGENIC | |
| SBS | Chr8 | 28713404 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 7275844 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 13330640 | T-A | Homo | INTERGENIC | |
| SBS | Chr11 | 12324285 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 15431153 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 15460682 | T-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 12652206 | C-G | Hetero | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 1386602 | 1386606 | 4 | OsKitaake05g017200 |
| Deletion | Chr4 | 1800241 | 1800250 | 9 | |
| Deletion | Chr2 | 3726583 | 3726587 | 4 | |
| Deletion | Chr7 | 5490438 | 5490439 | 1 | |
| Deletion | Chr5 | 6589567 | 6589571 | 4 | |
| Deletion | Chr8 | 11616853 | 11616863 | 10 | |
| Deletion | Chr5 | 20904222 | 20904233 | 11 | |
| Deletion | Chr7 | 21555262 | 21555264 | 2 | |
| Deletion | Chr1 | 27200767 | 27200768 | 1 | |
| Deletion | Chr7 | 27362356 | 27362362 | 6 | |
| Deletion | Chr3 | 27817746 | 27817748 | 2 | |
| Deletion | Chr3 | 36855111 | 36855112 | 1 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 43167423 | 43167426 | 2 | |
| Insertion | Chr4 | 25929398 | 25929401 | 2 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 6168121 | 6350015 | |
| Inversion | Chr7 | 26143172 | 26618175 | |
| Inversion | Chr7 | 26618165 | 27080331 | OsKitaake07g253200 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 4404084 | Chr2 | 29495023 | 2 |
| Translocation | Chr7 | 4411858 | Chr5 | 19430845 | OsKitaake07g055400 |
| Translocation | Chr7 | 4425070 | Chr5 | 19430854 | OsKitaake07g055600 |
| Translocation | Chr7 | 4425081 | Chr2 | 29494886 | 2 |