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Mutant Information

Mutant Name	FN_N1-26-1 [Download]
Generation	M3
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN_N1-26-1 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 32625472 C-T Homo INTERGENIC
SBS Chr2 2027788 G-A Hetero INTRON
SBS Chr2 9596689 A-G Homo INTERGENIC
SBS Chr2 10364795 T-A Homo UTR_5_PRIME
SBS Chr2 26836912 A-G Hetero INTERGENIC
SBS Chr3 15754817 G-C Hetero INTERGENIC
SBS Chr3 29433433 G-A Hetero INTRON
SBS Chr3 29433434 G-T Hetero INTRON
SBS Chr3 29433435 A-G Hetero INTRON
SBS Chr4 13338407 T-G Homo INTRON
SBS Chr4 14324619 G-A Homo INTERGENIC
SBS Chr4 29753606 C-T Hetero INTERGENIC
SBS Chr4 34280939 C-T Hetero INTRON
SBS Chr5 10194417 G-A Hetero INTERGENIC
SBS Chr5 22938341 C-T Hetero INTERGENIC
SBS Chr5 22938342 A-T Hetero INTERGENIC
SBS Chr7 12164573 C-T Hetero INTERGENIC
SBS Chr8 20600655 T-A Homo INTERGENIC
SBS Chr8 22170852 G-C Homo INTERGENIC
SBS Chr8 23587247 T-C Homo NON_SYNONYMOUS_CODING OsKitaake08g181400
SBS Chr8 29301727 C-T Homo INTERGENIC
SBS Chr9 1793303 C-A Hetero INTERGENIC
SBS Chr9 6465134 C-T Hetero INTERGENIC
SBS Chr9 7628388 G-A Hetero INTERGENIC
SBS Chr9 16840911 C-A Homo INTERGENIC
SBS Chr10 2022670 C-T Homo INTRON
SBS Chr10 11114216 A-G Homo INTERGENIC
SBS Chr10 13449503 G-A Homo INTERGENIC
SBS Chr11 241305 G-A Homo INTERGENIC
SBS Chr11 2353826 G-A Homo INTERGENIC
SBS Chr12 14259268 C-T Homo INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 1301001 1362000 60999 19
Deletion Chr6 5250974 5250975 1
Deletion Chr8 7891322 7891324 2
Deletion Chr6 9037044 9037059 15
Deletion Chr8 9723576 9723580 4
Deletion Chr1 11054259 11054268 9
Deletion Chr3 11800429 11800438 9
Deletion Chr5 13765707 13765709 2
Deletion Chr12 19524132 19524139 7
Deletion Chr4 20070318 20070322 4
Deletion Chr5 22514136 22514148 12
Deletion Chr2 23263477 23263485 8
Deletion Chr3 23429440 23429445 5
Deletion Chr1 28008914 28008931 17

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 14273622 14273625 2
Insertion Chr1 42367388 42367391 2
Insertion Chr3 24734285 24734288 2
Insertion Chr5 19459199 19459202 2
Insertion Chr7 21905284 21905286 1
Insertion Chr10 15787381 15787385 3

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 10139162 10171514
Inversion Chr6 10139165 10171513
Inversion Chr10 23053708 23394967
Inversion Chr10 23053713 23394969

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 6045849 Chr11 6171227

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	32625472	C-T	Homo	INTERGENIC
SBS	Chr2	2027788	G-A	Hetero	INTRON
SBS	Chr2	9596689	A-G	Homo	INTERGENIC
SBS	Chr2	10364795	T-A	Homo	UTR_5_PRIME
SBS	Chr2	26836912	A-G	Hetero	INTERGENIC
SBS	Chr3	15754817	G-C	Hetero	INTERGENIC
SBS	Chr3	29433433	G-A	Hetero	INTRON
SBS	Chr3	29433434	G-T	Hetero	INTRON
SBS	Chr3	29433435	A-G	Hetero	INTRON
SBS	Chr4	13338407	T-G	Homo	INTRON
SBS	Chr4	14324619	G-A	Homo	INTERGENIC
SBS	Chr4	29753606	C-T	Hetero	INTERGENIC
SBS	Chr4	34280939	C-T	Hetero	INTRON
SBS	Chr5	10194417	G-A	Hetero	INTERGENIC
SBS	Chr5	22938341	C-T	Hetero	INTERGENIC
SBS	Chr5	22938342	A-T	Hetero	INTERGENIC
SBS	Chr7	12164573	C-T	Hetero	INTERGENIC
SBS	Chr8	20600655	T-A	Homo	INTERGENIC
SBS	Chr8	22170852	G-C	Homo	INTERGENIC
SBS	Chr8	23587247	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g181400
SBS	Chr8	29301727	C-T	Homo	INTERGENIC
SBS	Chr9	1793303	C-A	Hetero	INTERGENIC
SBS	Chr9	6465134	C-T	Hetero	INTERGENIC
SBS	Chr9	7628388	G-A	Hetero	INTERGENIC
SBS	Chr9	16840911	C-A	Homo	INTERGENIC
SBS	Chr10	2022670	C-T	Homo	INTRON
SBS	Chr10	11114216	A-G	Homo	INTERGENIC
SBS	Chr10	13449503	G-A	Homo	INTERGENIC
SBS	Chr11	241305	G-A	Homo	INTERGENIC
SBS	Chr11	2353826	G-A	Homo	INTERGENIC
SBS	Chr12	14259268	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	1301001	1362000	60999	19
Deletion	Chr6	5250974	5250975	1
Deletion	Chr8	7891322	7891324	2
Deletion	Chr6	9037044	9037059	15
Deletion	Chr8	9723576	9723580	4
Deletion	Chr1	11054259	11054268	9
Deletion	Chr3	11800429	11800438	9
Deletion	Chr5	13765707	13765709	2
Deletion	Chr12	19524132	19524139	7
Deletion	Chr4	20070318	20070322	4
Deletion	Chr5	22514136	22514148	12
Deletion	Chr2	23263477	23263485	8
Deletion	Chr3	23429440	23429445	5
Deletion	Chr1	28008914	28008931	17

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	10139162	10171514
Inversion	Chr6	10139165	10171513
Inversion	Chr10	23053708	23394967
Inversion	Chr10	23053713	23394969

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes