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Mutant Information

Mutant Name	FN_N2-29a-1 [Download]
Generation	M3
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN_N2-29a-1 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5065925 A-G Homo INTERGENIC
SBS Chr1 31365822 T-A Hetero INTRON
SBS Chr1 33014142 G-A Hetero INTRON
SBS Chr1 33401880 C-T Hetero INTERGENIC
SBS Chr1 40528338 T-C Hetero INTRON
SBS Chr2 11217882 T-A Hetero UTR_3_PRIME
SBS Chr2 11645387 A-T Homo NON_SYNONYMOUS_CODING OsKitaake02g134100
SBS Chr2 11645388 A-T Homo NON_SYNONYMOUS_CODING OsKitaake02g134100
SBS Chr2 27110222 C-T Homo INTERGENIC
SBS Chr2 35281201 G-T Homo SYNONYMOUS_CODING
SBS Chr3 6322316 A-T Homo INTERGENIC
SBS Chr3 14638260 A-C Homo NON_SYNONYMOUS_CODING OsKitaake03g190000
SBS Chr3 34877322 T-C Homo INTRON
SBS Chr4 1229828 C-A Hetero INTERGENIC
SBS Chr4 31143158 C-G Homo INTERGENIC
SBS Chr5 3458054 T-A Hetero INTERGENIC
SBS Chr5 22533606 G-A Hetero INTRON
SBS Chr5 27652286 A-G Hetero INTERGENIC
SBS Chr6 5279678 C-T Hetero INTERGENIC
SBS Chr6 18406786 C-T Homo INTERGENIC
SBS Chr7 2608934 G-T Hetero INTERGENIC
SBS Chr7 2608947 G-T Hetero INTERGENIC
SBS Chr8 10893130 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake08g098000
SBS Chr8 15855578 T-A Hetero INTERGENIC
SBS Chr9 11816099 C-T Hetero INTERGENIC
SBS Chr11 11503379 G-A Homo INTERGENIC
SBS Chr12 7185473 A-T Homo UTR_5_PRIME

Deletions: 25

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 802001 869000 66999 8
Deletion Chr7 1222339 1222348 9
Deletion Chr12 1929536 1929549 13
Deletion Chr12 2205855 2205858 3
Deletion Chr10 2215524 2215527 3 OsKitaake10g017400
Deletion Chr7 2362754 2362769 15
Deletion Chr2 5058001 5106000 47999 4
Deletion Chr10 5306389 5306401 12
Deletion Chr3 6742599 6742602 3 OsKitaake03g095700
Deletion Chr3 6897692 6897693 1
Deletion Chr10 7480327 7480329 2
Deletion Chr2 11538001 11639000 100999 6
Deletion Chr12 12464447 12464451 4
Deletion Chr12 13537867 13537882 15
Deletion Chr12 13717362 13717364 2
Deletion Chr2 16836074 16836086 12
Deletion Chr5 19073739 19073742 3
Deletion Chr2 26641001 26695000 53999 7
Deletion Chr3 26674331 26674333 2
Deletion Chr6 26952041 26952055 14 OsKitaake06g241000
Deletion Chr6 27019836 27019840 4
Deletion Chr2 27360250 27360251 1
Deletion Chr8 27971723 27971731 8
Deletion Chr4 31399744 31399748 4
Deletion Chr1 36979048 36979049 1 OsKitaake01g394150

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 19580487 19580489 1
Insertion Chr4 17263568 17263571 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 4786489 5061668 OsKitaake02g066100
Inversion Chr2 4786500 5102591 OsKitaake02g066100
Inversion Chr12 15676919 15729008 OsKitaake12g121300
Inversion Chr12 15676935 15729022 OsKitaake12g121300

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 802617 Chr2 28572115
Translocation Chr2 11747630 Chr1 13043365
Translocation Chr3 14715592 Chr2 11747783
Translocation Chr3 17446438 Chr2 11747782 OsKitaake03g214800
Translocation Chr3 17446439 Chr1 13043364 OsKitaake03g214800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5065925	A-G	Homo	INTERGENIC
SBS	Chr1	31365822	T-A	Hetero	INTRON
SBS	Chr1	33014142	G-A	Hetero	INTRON
SBS	Chr1	33401880	C-T	Hetero	INTERGENIC
SBS	Chr1	40528338	T-C	Hetero	INTRON
SBS	Chr2	11217882	T-A	Hetero	UTR_3_PRIME
SBS	Chr2	11645387	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g134100
SBS	Chr2	11645388	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g134100
SBS	Chr2	27110222	C-T	Homo	INTERGENIC
SBS	Chr2	35281201	G-T	Homo	SYNONYMOUS_CODING
SBS	Chr3	6322316	A-T	Homo	INTERGENIC
SBS	Chr3	14638260	A-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g190000
SBS	Chr3	34877322	T-C	Homo	INTRON
SBS	Chr4	1229828	C-A	Hetero	INTERGENIC
SBS	Chr4	31143158	C-G	Homo	INTERGENIC
SBS	Chr5	3458054	T-A	Hetero	INTERGENIC
SBS	Chr5	22533606	G-A	Hetero	INTRON
SBS	Chr5	27652286	A-G	Hetero	INTERGENIC
SBS	Chr6	5279678	C-T	Hetero	INTERGENIC
SBS	Chr6	18406786	C-T	Homo	INTERGENIC
SBS	Chr7	2608934	G-T	Hetero	INTERGENIC
SBS	Chr7	2608947	G-T	Hetero	INTERGENIC
SBS	Chr8	10893130	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g098000
SBS	Chr8	15855578	T-A	Hetero	INTERGENIC
SBS	Chr9	11816099	C-T	Hetero	INTERGENIC
SBS	Chr11	11503379	G-A	Homo	INTERGENIC
SBS	Chr12	7185473	A-T	Homo	UTR_5_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	802001	869000	66999	8
Deletion	Chr7	1222339	1222348	9
Deletion	Chr12	1929536	1929549	13
Deletion	Chr12	2205855	2205858	3
Deletion	Chr10	2215524	2215527	3	OsKitaake10g017400
Deletion	Chr7	2362754	2362769	15
Deletion	Chr2	5058001	5106000	47999	4
Deletion	Chr10	5306389	5306401	12
Deletion	Chr3	6742599	6742602	3	OsKitaake03g095700
Deletion	Chr3	6897692	6897693	1
Deletion	Chr10	7480327	7480329	2
Deletion	Chr2	11538001	11639000	100999	6
Deletion	Chr12	12464447	12464451	4
Deletion	Chr12	13537867	13537882	15
Deletion	Chr12	13717362	13717364	2
Deletion	Chr2	16836074	16836086	12
Deletion	Chr5	19073739	19073742	3
Deletion	Chr2	26641001	26695000	53999	7
Deletion	Chr3	26674331	26674333	2
Deletion	Chr6	26952041	26952055	14	OsKitaake06g241000
Deletion	Chr6	27019836	27019840	4
Deletion	Chr2	27360250	27360251	1
Deletion	Chr8	27971723	27971731	8
Deletion	Chr4	31399744	31399748	4
Deletion	Chr1	36979048	36979049	1	OsKitaake01g394150

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	4786489	5061668	OsKitaake02g066100
Inversion	Chr2	4786500	5102591	OsKitaake02g066100
Inversion	Chr12	15676919	15729008	OsKitaake12g121300
Inversion	Chr12	15676935	15729022	OsKitaake12g121300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes