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| Mutant Information |
|---|
| Mutant Name | N1-130-2 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download N1-130-2 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 39
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 3346605 | C-G | Homo | INTERGENIC | |
| SBS | Chr1 | 15312359 | A-G | Homo | INTERGENIC | |
| SBS | Chr1 | 38756332 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 11863792 | G-T | Hetero | STOP_GAINED | OsKitaake02g135400 |
| SBS | Chr2 | 21892968 | C-A | Homo | INTERGENIC | |
| SBS | Chr2 | 35406460 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 9160867 | G-T | Hetero | SPLICE_SITE_REGION | |
| SBS | Chr3 | 11919582 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 32963366 | G-T | Homo | INTRON | |
| SBS | Chr4 | 3218938 | T-C | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr4 | 18462295 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 24592708 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 36099107 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 5913345 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 17356545 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 21170378 | C-T | Homo | INTRON | |
| SBS | Chr6 | 3167739 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 19559004 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 20116196 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 20473838 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 8683026 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 10553796 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 10553797 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 29336220 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake07g281900 |
| SBS | Chr8 | 7392145 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 10630013 | A-G | Homo | INTERGENIC | |
| SBS | Chr8 | 22753561 | C-T | Hetero | INTRON | |
| SBS | Chr9 | 3615100 | T-A | Homo | INTERGENIC | |
| SBS | Chr9 | 16853209 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 16929794 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 1946122 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 10965845 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 13731839 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 15621755 | T-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g125600 |
| SBS | Chr11 | 15643416 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 15680135 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 15766914 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 1152662 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 7878077 | C-T | Hetero | INTERGENIC |
Deletions: 8
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 1364134 | 1364135 | 1 | OsKitaake01g016000 |
| Deletion | Chr5 | 6645542 | 6645544 | 2 | |
| Deletion | Chr9 | 8386469 | 8386595 | 126 | |
| Deletion | Chr4 | 9158229 | 9158231 | 2 | OsKitaake04g047100 |
| Deletion | Chr9 | 11952078 | 11952080 | 2 | |
| Deletion | Chr10 | 12492517 | 12492518 | 1 | OsKitaake10g075600 |
| Deletion | Chr3 | 20920027 | 20920034 | 7 | |
| Deletion | Chr1 | 39234058 | 39234060 | 2 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 6733706 | 6733709 | 2 | |
| Insertion | Chr1 | 26000645 | 26000648 | 2 | |
| Insertion | Chr6 | 90931 | 90933 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr10 | 6220716 | 6318298 | |
| Inversion | Chr10 | 6318307 | 6386258 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 1147980 | Chr10 | 15342882 | |
| Translocation | Chr11 | 2003300 | Chr9 | 16919317 | OsKitaake11g028800 |
| Translocation | Chr11 | 2003886 | Chr9 | 16919344 | OsKitaake11g028800 |