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Mutant Information

Mutant Name	N1-130-3 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download N1-130-3 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2946637 C-A Hetero INTERGENIC
SBS Chr1 2946956 G-C Hetero INTERGENIC
SBS Chr1 3346605 C-G Hetero INTERGENIC
SBS Chr1 15312359 A-G Homo INTERGENIC
SBS Chr1 38756332 C-T Homo INTERGENIC
SBS Chr2 1895116 G-A Hetero INTERGENIC
SBS Chr2 11863792 G-T Hetero STOP_GAINED OsKitaake02g135400
SBS Chr2 21892968 C-A Homo INTERGENIC
SBS Chr2 35406460 G-A Hetero UTR_3_PRIME
SBS Chr3 546654 G-T Hetero UTR_5_PRIME
SBS Chr3 11919582 G-A Homo INTERGENIC
SBS Chr3 32963366 G-T Homo INTRON
SBS Chr4 3218938 T-C Homo SYNONYMOUS_CODING
SBS Chr4 18462295 C-T Homo INTERGENIC
SBS Chr4 33309558 G-T Hetero INTERGENIC
SBS Chr4 36099107 C-T Hetero INTERGENIC
SBS Chr5 4264530 A-T Hetero INTERGENIC
SBS Chr5 5913345 A-T Hetero INTERGENIC
SBS Chr5 15422821 A-T Hetero INTERGENIC
SBS Chr5 17356545 T-C Homo INTERGENIC
SBS Chr5 21170378 C-T Homo INTRON
SBS Chr6 3167739 G-A Homo INTERGENIC
SBS Chr6 19559004 T-C Homo INTERGENIC
SBS Chr7 4907560 C-A Hetero UTR_3_PRIME
SBS Chr7 8683026 C-T Hetero INTERGENIC
SBS Chr7 29336220 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g281900
SBS Chr8 7392145 C-T Homo INTERGENIC
SBS Chr8 10630013 A-G Hetero INTERGENIC
SBS Chr8 20728392 C-T Hetero INTERGENIC
SBS Chr8 22753561 C-T Hetero INTRON
SBS Chr9 3615100 T-A Hetero INTERGENIC
SBS Chr9 16853209 A-G Hetero INTERGENIC
SBS Chr9 16929794 A-G Hetero INTERGENIC
SBS Chr10 1946122 G-A Hetero INTERGENIC
SBS Chr11 12171312 C-G Homo INTERGENIC
SBS Chr11 13731839 C-T Homo INTERGENIC
SBS Chr11 15754393 G-T Hetero INTERGENIC
SBS Chr12 1152662 C-T Homo INTERGENIC
SBS Chr12 18831618 G-A Homo INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 188965 188967 2 OsKitaake08g002600
Deletion Chr8 3677987 3678004 17
Deletion Chr3 8001275 8001279 4 OsKitaake03g110800
Deletion Chr10 8675813 8675979 166
Deletion Chr9 11952078 11952080 2
Deletion Chr3 20920027 20920034 7
Deletion Chr12 23565179 23565181 2
Deletion Chr3 24409545 24409549 4
Deletion Chr4 24598146 24598148 2
Deletion Chr3 32002955 32002974 19

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 4528057 4528061 3
Insertion Chr9 7979442 7979445 2
Insertion Chr11 13068278 13068280 1
Insertion Chr8 8067714 8067716 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 6220716 6318298
Inversion Chr10 6318306 6386268

Translocations: 8

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 1147980 Chr10 15342882
Translocation Chr11 2003300 Chr9 16919317 OsKitaake11g028800
Translocation Chr11 2003886 Chr9 16919344 OsKitaake11g028800
Translocation Chr9 17925126 Chr7 23722724 OsKitaake07g208400
Translocation Chr9 17925133 Chr7 29255415 OsKitaake07g280800
Translocation Chr9 17925134 Chr3 14795487 OsKitaake03g192900
Translocation Chr9 17931319 Chr7 29255399 2
Translocation Chr9 17931323 Chr7 23722710 OsKitaake07g208400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2946637	C-A	Hetero	INTERGENIC
SBS	Chr1	2946956	G-C	Hetero	INTERGENIC
SBS	Chr1	3346605	C-G	Hetero	INTERGENIC
SBS	Chr1	15312359	A-G	Homo	INTERGENIC
SBS	Chr1	38756332	C-T	Homo	INTERGENIC
SBS	Chr2	1895116	G-A	Hetero	INTERGENIC
SBS	Chr2	11863792	G-T	Hetero	STOP_GAINED	OsKitaake02g135400
SBS	Chr2	21892968	C-A	Homo	INTERGENIC
SBS	Chr2	35406460	G-A	Hetero	UTR_3_PRIME
SBS	Chr3	546654	G-T	Hetero	UTR_5_PRIME
SBS	Chr3	11919582	G-A	Homo	INTERGENIC
SBS	Chr3	32963366	G-T	Homo	INTRON
SBS	Chr4	3218938	T-C	Homo	SYNONYMOUS_CODING
SBS	Chr4	18462295	C-T	Homo	INTERGENIC
SBS	Chr4	33309558	G-T	Hetero	INTERGENIC
SBS	Chr4	36099107	C-T	Hetero	INTERGENIC
SBS	Chr5	4264530	A-T	Hetero	INTERGENIC
SBS	Chr5	5913345	A-T	Hetero	INTERGENIC
SBS	Chr5	15422821	A-T	Hetero	INTERGENIC
SBS	Chr5	17356545	T-C	Homo	INTERGENIC
SBS	Chr5	21170378	C-T	Homo	INTRON
SBS	Chr6	3167739	G-A	Homo	INTERGENIC
SBS	Chr6	19559004	T-C	Homo	INTERGENIC
SBS	Chr7	4907560	C-A	Hetero	UTR_3_PRIME
SBS	Chr7	8683026	C-T	Hetero	INTERGENIC
SBS	Chr7	29336220	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g281900
SBS	Chr8	7392145	C-T	Homo	INTERGENIC
SBS	Chr8	10630013	A-G	Hetero	INTERGENIC
SBS	Chr8	20728392	C-T	Hetero	INTERGENIC
SBS	Chr8	22753561	C-T	Hetero	INTRON
SBS	Chr9	3615100	T-A	Hetero	INTERGENIC
SBS	Chr9	16853209	A-G	Hetero	INTERGENIC
SBS	Chr9	16929794	A-G	Hetero	INTERGENIC
SBS	Chr10	1946122	G-A	Hetero	INTERGENIC
SBS	Chr11	12171312	C-G	Homo	INTERGENIC
SBS	Chr11	13731839	C-T	Homo	INTERGENIC
SBS	Chr11	15754393	G-T	Hetero	INTERGENIC
SBS	Chr12	1152662	C-T	Homo	INTERGENIC
SBS	Chr12	18831618	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	188965	188967	2	OsKitaake08g002600
Deletion	Chr8	3677987	3678004	17
Deletion	Chr3	8001275	8001279	4	OsKitaake03g110800
Deletion	Chr10	8675813	8675979	166
Deletion	Chr9	11952078	11952080	2
Deletion	Chr3	20920027	20920034	7
Deletion	Chr12	23565179	23565181	2
Deletion	Chr3	24409545	24409549	4
Deletion	Chr4	24598146	24598148	2
Deletion	Chr3	32002955	32002974	19

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	6220716	6318298
Inversion	Chr10	6318306	6386268

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes