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Mutant Information

Mutant Name	N1-169-2 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download N1-169-2 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15352309 C-G Homo INTERGENIC
SBS Chr1 20476104 C-G Homo INTERGENIC
SBS Chr1 26085850 G-A Homo INTERGENIC
SBS Chr1 29427413 A-T Homo INTERGENIC
SBS Chr1 32694971 A-T Homo INTERGENIC
SBS Chr1 42597663 C-T Homo INTERGENIC
SBS Chr2 17777239 G-A Hetero INTERGENIC
SBS Chr2 28657346 C-T Hetero INTERGENIC
SBS Chr2 30458717 A-T Homo SYNONYMOUS_CODING
SBS Chr2 34237655 A-G Homo INTERGENIC
SBS Chr3 12967649 A-T Hetero INTRON
SBS Chr3 32010501 T-A Homo INTERGENIC
SBS Chr4 7539500 A-G Homo INTERGENIC
SBS Chr4 11746556 G-A Hetero INTERGENIC
SBS Chr4 17012507 A-C Homo INTERGENIC
SBS Chr4 31659425 G-A Homo UTR_3_PRIME
SBS Chr4 31659426 C-A Homo UTR_3_PRIME
SBS Chr5 11454918 G-A Hetero INTERGENIC
SBS Chr5 27736468 C-T Homo INTRON
SBS Chr5 27736469 G-A Homo INTRON
SBS Chr6 10348527 G-T Homo NON_SYNONYMOUS_CODING OsKitaake06g117200
SBS Chr6 10840802 C-A Homo INTERGENIC
SBS Chr6 20327187 G-A Homo INTRON
SBS Chr7 14317356 C-T Homo INTRON
SBS Chr8 509201 C-T Hetero INTERGENIC
SBS Chr8 25977114 A-T Homo INTERGENIC
SBS Chr9 5484440 T-A Homo INTERGENIC
SBS Chr9 10912260 A-T Hetero INTERGENIC
SBS Chr10 1019831 T-A Hetero INTERGENIC
SBS Chr10 5336431 C-T Hetero INTERGENIC
SBS Chr10 17764953 C-T Hetero INTRON
SBS Chr10 19567459 G-A Homo SYNONYMOUS_CODING
SBS Chr10 19580590 C-G Homo UTR_3_PRIME
SBS Chr11 808327 G-A Hetero INTERGENIC
SBS Chr11 5396582 T-A Homo INTERGENIC
SBS Chr11 16125326 C-A Hetero INTERGENIC
SBS Chr11 21087750 G-A Hetero INTERGENIC
SBS Chr11 26482651 G-A Homo INTERGENIC
SBS Chr12 12268576 T-A Hetero INTERGENIC
SBS Chr12 14743116 A-T Hetero INTERGENIC
SBS Chr12 15515046 A-T Hetero INTERGENIC
SBS Chr12 20185679 G-C Hetero INTERGENIC
SBS Chr12 20469291 A-G Hetero INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 20692 21044 352
Deletion Chr2 7586001 7678000 91999 6
Deletion Chr6 7688377 7688382 5
Deletion Chr3 8625621 8625623 2
Deletion Chr6 10037106 10037108 2
Deletion Chr12 18339424 18339534 110
Deletion Chr5 18675395 18675396 1
Deletion Chr12 19639777 19639781 4 OsKitaake12g147600
Deletion Chr4 20921387 20921394 7 OsKitaake04g114300
Deletion Chr6 21954658 21954659 1
Deletion Chr12 23138541 23138542 1
Deletion Chr5 23239191 23239201 10
Deletion Chr2 23429427 23429436 9 OsKitaake02g229500
Deletion Chr5 25759113 25759115 2
Deletion Chr4 25930493 25930586 93
Deletion Chr3 26621031 26621039 8
Deletion Chr3 29587117 29587118 1
Deletion Chr2 33235848 33235856 8
Deletion Chr4 33660528 33660529 1
Deletion Chr3 35517001 35525000 7999

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 1061702 1061705 2
Insertion Chr6 15562700 15562707 6
Insertion Chr7 17400373 17400376 2
Insertion Chr8 28304244 28304247 2
Insertion Chr2 10324700 10324702 1
Insertion Chr3 19362193 19362195 1
Insertion Chr4 10454656 10454658 1
Insertion Chr9 4742553 4742556 2

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 4094109 4176193
Inversion Chr8 4094114 4176195
Inversion Chr2 7350343 7583844 2
Inversion Chr2 7350687 7679619 OsKitaake02g100500
Inversion Chr1 33759873 34048605 OsKitaake01g350400
Inversion Chr1 33831528 34048604 2

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 6915778 Chr2 7350679 OsKitaake02g098100
Translocation Chr9 21920581 Chr4 26505278 OsKitaake04g190400
Translocation Chr9 22209710 Chr4 26505284 OsKitaake04g190400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15352309	C-G	Homo	INTERGENIC
SBS	Chr1	20476104	C-G	Homo	INTERGENIC
SBS	Chr1	26085850	G-A	Homo	INTERGENIC
SBS	Chr1	29427413	A-T	Homo	INTERGENIC
SBS	Chr1	32694971	A-T	Homo	INTERGENIC
SBS	Chr1	42597663	C-T	Homo	INTERGENIC
SBS	Chr2	17777239	G-A	Hetero	INTERGENIC
SBS	Chr2	28657346	C-T	Hetero	INTERGENIC
SBS	Chr2	30458717	A-T	Homo	SYNONYMOUS_CODING
SBS	Chr2	34237655	A-G	Homo	INTERGENIC
SBS	Chr3	12967649	A-T	Hetero	INTRON
SBS	Chr3	32010501	T-A	Homo	INTERGENIC
SBS	Chr4	7539500	A-G	Homo	INTERGENIC
SBS	Chr4	11746556	G-A	Hetero	INTERGENIC
SBS	Chr4	17012507	A-C	Homo	INTERGENIC
SBS	Chr4	31659425	G-A	Homo	UTR_3_PRIME
SBS	Chr4	31659426	C-A	Homo	UTR_3_PRIME
SBS	Chr5	11454918	G-A	Hetero	INTERGENIC
SBS	Chr5	27736468	C-T	Homo	INTRON
SBS	Chr5	27736469	G-A	Homo	INTRON
SBS	Chr6	10348527	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g117200
SBS	Chr6	10840802	C-A	Homo	INTERGENIC
SBS	Chr6	20327187	G-A	Homo	INTRON
SBS	Chr7	14317356	C-T	Homo	INTRON
SBS	Chr8	509201	C-T	Hetero	INTERGENIC
SBS	Chr8	25977114	A-T	Homo	INTERGENIC
SBS	Chr9	5484440	T-A	Homo	INTERGENIC
SBS	Chr9	10912260	A-T	Hetero	INTERGENIC
SBS	Chr10	1019831	T-A	Hetero	INTERGENIC
SBS	Chr10	5336431	C-T	Hetero	INTERGENIC
SBS	Chr10	17764953	C-T	Hetero	INTRON
SBS	Chr10	19567459	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr10	19580590	C-G	Homo	UTR_3_PRIME
SBS	Chr11	808327	G-A	Hetero	INTERGENIC
SBS	Chr11	5396582	T-A	Homo	INTERGENIC
SBS	Chr11	16125326	C-A	Hetero	INTERGENIC
SBS	Chr11	21087750	G-A	Hetero	INTERGENIC
SBS	Chr11	26482651	G-A	Homo	INTERGENIC
SBS	Chr12	12268576	T-A	Hetero	INTERGENIC
SBS	Chr12	14743116	A-T	Hetero	INTERGENIC
SBS	Chr12	15515046	A-T	Hetero	INTERGENIC
SBS	Chr12	20185679	G-C	Hetero	INTERGENIC
SBS	Chr12	20469291	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	20692	21044	352
Deletion	Chr2	7586001	7678000	91999	6
Deletion	Chr6	7688377	7688382	5
Deletion	Chr3	8625621	8625623	2
Deletion	Chr6	10037106	10037108	2
Deletion	Chr12	18339424	18339534	110
Deletion	Chr5	18675395	18675396	1
Deletion	Chr12	19639777	19639781	4	OsKitaake12g147600
Deletion	Chr4	20921387	20921394	7	OsKitaake04g114300
Deletion	Chr6	21954658	21954659	1
Deletion	Chr12	23138541	23138542	1
Deletion	Chr5	23239191	23239201	10
Deletion	Chr2	23429427	23429436	9	OsKitaake02g229500
Deletion	Chr5	25759113	25759115	2
Deletion	Chr4	25930493	25930586	93
Deletion	Chr3	26621031	26621039	8
Deletion	Chr3	29587117	29587118	1
Deletion	Chr2	33235848	33235856	8
Deletion	Chr4	33660528	33660529	1
Deletion	Chr3	35517001	35525000	7999

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	4094109	4176193
Inversion	Chr8	4094114	4176195
Inversion	Chr2	7350343	7583844	2
Inversion	Chr2	7350687	7679619	OsKitaake02g100500
Inversion	Chr1	33759873	34048605	OsKitaake01g350400
Inversion	Chr1	33831528	34048604	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes