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Mutant Information

Mutant Name	N1-169-3 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download N1-169-3 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 54

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 20476104 C-G Homo INTERGENIC
SBS Chr1 26085850 G-A Hetero INTERGENIC
SBS Chr1 29427413 A-T Hetero INTERGENIC
SBS Chr1 32694971 A-T Homo INTERGENIC
SBS Chr1 42597663 C-T Homo INTERGENIC
SBS Chr2 17777239 G-A Hetero INTERGENIC
SBS Chr2 28657346 C-T Hetero INTERGENIC
SBS Chr2 30458717 A-T Homo SYNONYMOUS_CODING
SBS Chr2 34237655 A-G Hetero INTERGENIC
SBS Chr3 12967649 A-T Hetero INTRON
SBS Chr3 22329539 T-C Hetero INTERGENIC
SBS Chr3 32010501 T-A Homo INTERGENIC
SBS Chr4 2750121 A-C Hetero INTERGENIC
SBS Chr4 7539500 A-G Homo INTERGENIC
SBS Chr4 17012507 A-C Homo INTERGENIC
SBS Chr4 31659425 G-A Homo UTR_3_PRIME
SBS Chr4 31659426 C-A Homo UTR_3_PRIME
SBS Chr4 33690266 G-A Hetero INTERGENIC
SBS Chr5 3136458 A-T Homo INTERGENIC
SBS Chr5 6955363 T-A Hetero INTERGENIC
SBS Chr5 11227745 G-A Hetero INTERGENIC
SBS Chr5 11454918 G-A Hetero INTERGENIC
SBS Chr5 27736468 C-T Homo INTRON
SBS Chr5 27736469 G-A Homo INTRON
SBS Chr6 6777124 G-C Hetero INTERGENIC
SBS Chr6 12955525 T-A Homo INTERGENIC
SBS Chr6 20327187 G-A Homo INTRON
SBS Chr7 12696361 C-T Hetero INTERGENIC
SBS Chr7 14317356 C-T Homo INTRON
SBS Chr8 509201 C-T Hetero INTERGENIC
SBS Chr8 20055351 G-A Hetero INTERGENIC
SBS Chr8 25880941 G-A Hetero INTERGENIC
SBS Chr8 25894459 A-T Homo INTERGENIC
SBS Chr9 5484440 T-A Homo INTERGENIC
SBS Chr9 8006979 A-T Hetero INTERGENIC
SBS Chr9 10912260 A-T Hetero INTERGENIC
SBS Chr9 22607373 T-C Hetero INTERGENIC
SBS Chr10 19876 C-G Hetero INTERGENIC
SBS Chr10 1019831 T-A Hetero INTERGENIC
SBS Chr10 5336431 C-T Hetero INTERGENIC
SBS Chr10 19567459 G-A Homo SYNONYMOUS_CODING
SBS Chr10 19580590 C-G Homo UTR_3_PRIME
SBS Chr10 19972193 A-C Hetero INTERGENIC
SBS Chr11 808327 G-A Hetero INTERGENIC
SBS Chr11 5396582 T-A Homo INTERGENIC
SBS Chr11 14256413 C-A Hetero INTERGENIC
SBS Chr11 26482651 G-A Hetero INTERGENIC
SBS Chr12 11827347 A-T Hetero INTERGENIC
SBS Chr12 12268576 T-A Hetero INTERGENIC
SBS Chr12 14743116 A-T Hetero INTERGENIC
SBS Chr12 15515046 A-T Hetero INTERGENIC
SBS Chr12 20185679 G-C Hetero INTERGENIC
SBS Chr12 20469291 A-G Hetero INTERGENIC
SBS Chr12 24460381 G-A Hetero INTERGENIC

Deletions: 45

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 19031 19032 1
Deletion Chr6 21854 21856 2
Deletion Chr11 1416959 1416960 1
Deletion Chr9 2745018 2745019 1
Deletion Chr9 2755628 2755783 155
Deletion Chr1 6263685 6263687 2
Deletion Chr10 8669477 8669643 166
Deletion Chr10 8672714 8672715 1
Deletion Chr10 8679833 8679834 1
Deletion Chr4 9362474 9362476 2
Deletion Chr4 10449800 10449955 155
Deletion Chr4 10452149 10452304 155
Deletion Chr12 11719330 11719495 165
Deletion Chr11 12520454 12520611 157
Deletion Chr11 12521033 12521199 166
Deletion Chr11 12523600 12523766 166
Deletion Chr6 15743124 15743125 1
Deletion Chr6 15749580 15749581 1
Deletion Chr6 15750509 15750510 1
Deletion Chr6 15750523 15750524 1
Deletion Chr1 17199745 17199900 155
Deletion Chr1 17284932 17284933 1
Deletion Chr5 18675395 18675396 1
Deletion Chr12 19381706 19381716 10
Deletion Chr12 19639777 19639781 4 OsKitaake12g147600
Deletion Chr3 20001977 20002132 155
Deletion Chr3 20046701 20046856 155
Deletion Chr3 20050721 20050876 155
Deletion Chr3 20058944 20059409 465
Deletion Chr6 20564524 20564534 10
Deletion Chr12 21054678 21054680 2
Deletion Chr6 21954658 21954659 1
Deletion Chr12 23138541 23138542 1
Deletion Chr5 23239191 23239201 10
Deletion Chr2 23429427 23429436 9 OsKitaake02g229500
Deletion Chr3 23781521 23781537 16
Deletion Chr7 24521237 24521261 24
Deletion Chr3 26621031 26621039 8
Deletion Chr2 28605688 28605689 1
Deletion Chr3 29587117 29587118 1
Deletion Chr5 30246720 30246721 1
Deletion Chr2 33235848 33235856 8
Deletion Chr3 35517001 35526000 8999
Deletion Chr1 40156569 40156575 6
Deletion Chr1 44138646 44138654 8 OsKitaake01g492700

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 28304244 28304247 2
Insertion Chr2 13864790 13864792 1
Insertion Chr3 19007812 19007815 2
Insertion Chr3 20027335 20027337 1
Insertion Chr11 12530004 12530006 1

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 4094109 4176193
Inversion Chr8 4094114 4176195
Inversion Chr2 7583954 7679596 2
Inversion Chr2 7584070 7666802 OsKitaake02g099900
Inversion Chr1 33759873 34048605 OsKitaake01g350400
Inversion Chr1 33831528 34048604 2

Translocations: 8

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 5680353 Chr2 7350598 OsKitaake02g098100
Translocation Chr11 6915778 Chr2 7350679 OsKitaake02g098100
Translocation Chr2 7350347 Chr1 25504216 OsKitaake02g098100
Translocation Chr2 7350595 Chr1 25504220 OsKitaake02g098100
Translocation Chr10 8667818 Chr1 17285795
Translocation Chr4 25617951 Chr2 7666795
Translocation Chr4 25617963 Chr2 7583858 OsKitaake02g099900
Translocation Chr3 35516801 Chr1 33831859 OsKitaake01g347800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20476104	C-G	Homo	INTERGENIC
SBS	Chr1	26085850	G-A	Hetero	INTERGENIC
SBS	Chr1	29427413	A-T	Hetero	INTERGENIC
SBS	Chr1	32694971	A-T	Homo	INTERGENIC
SBS	Chr1	42597663	C-T	Homo	INTERGENIC
SBS	Chr2	17777239	G-A	Hetero	INTERGENIC
SBS	Chr2	28657346	C-T	Hetero	INTERGENIC
SBS	Chr2	30458717	A-T	Homo	SYNONYMOUS_CODING
SBS	Chr2	34237655	A-G	Hetero	INTERGENIC
SBS	Chr3	12967649	A-T	Hetero	INTRON
SBS	Chr3	22329539	T-C	Hetero	INTERGENIC
SBS	Chr3	32010501	T-A	Homo	INTERGENIC
SBS	Chr4	2750121	A-C	Hetero	INTERGENIC
SBS	Chr4	7539500	A-G	Homo	INTERGENIC
SBS	Chr4	17012507	A-C	Homo	INTERGENIC
SBS	Chr4	31659425	G-A	Homo	UTR_3_PRIME
SBS	Chr4	31659426	C-A	Homo	UTR_3_PRIME
SBS	Chr4	33690266	G-A	Hetero	INTERGENIC
SBS	Chr5	3136458	A-T	Homo	INTERGENIC
SBS	Chr5	6955363	T-A	Hetero	INTERGENIC
SBS	Chr5	11227745	G-A	Hetero	INTERGENIC
SBS	Chr5	11454918	G-A	Hetero	INTERGENIC
SBS	Chr5	27736468	C-T	Homo	INTRON
SBS	Chr5	27736469	G-A	Homo	INTRON
SBS	Chr6	6777124	G-C	Hetero	INTERGENIC
SBS	Chr6	12955525	T-A	Homo	INTERGENIC
SBS	Chr6	20327187	G-A	Homo	INTRON
SBS	Chr7	12696361	C-T	Hetero	INTERGENIC
SBS	Chr7	14317356	C-T	Homo	INTRON
SBS	Chr8	509201	C-T	Hetero	INTERGENIC
SBS	Chr8	20055351	G-A	Hetero	INTERGENIC
SBS	Chr8	25880941	G-A	Hetero	INTERGENIC
SBS	Chr8	25894459	A-T	Homo	INTERGENIC
SBS	Chr9	5484440	T-A	Homo	INTERGENIC
SBS	Chr9	8006979	A-T	Hetero	INTERGENIC
SBS	Chr9	10912260	A-T	Hetero	INTERGENIC
SBS	Chr9	22607373	T-C	Hetero	INTERGENIC
SBS	Chr10	19876	C-G	Hetero	INTERGENIC
SBS	Chr10	1019831	T-A	Hetero	INTERGENIC
SBS	Chr10	5336431	C-T	Hetero	INTERGENIC
SBS	Chr10	19567459	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr10	19580590	C-G	Homo	UTR_3_PRIME
SBS	Chr10	19972193	A-C	Hetero	INTERGENIC
SBS	Chr11	808327	G-A	Hetero	INTERGENIC
SBS	Chr11	5396582	T-A	Homo	INTERGENIC
SBS	Chr11	14256413	C-A	Hetero	INTERGENIC
SBS	Chr11	26482651	G-A	Hetero	INTERGENIC
SBS	Chr12	11827347	A-T	Hetero	INTERGENIC
SBS	Chr12	12268576	T-A	Hetero	INTERGENIC
SBS	Chr12	14743116	A-T	Hetero	INTERGENIC
SBS	Chr12	15515046	A-T	Hetero	INTERGENIC
SBS	Chr12	20185679	G-C	Hetero	INTERGENIC
SBS	Chr12	20469291	A-G	Hetero	INTERGENIC
SBS	Chr12	24460381	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	19031	19032	1
Deletion	Chr6	21854	21856	2
Deletion	Chr11	1416959	1416960	1
Deletion	Chr9	2745018	2745019	1
Deletion	Chr9	2755628	2755783	155
Deletion	Chr1	6263685	6263687	2
Deletion	Chr10	8669477	8669643	166
Deletion	Chr10	8672714	8672715	1
Deletion	Chr10	8679833	8679834	1
Deletion	Chr4	9362474	9362476	2
Deletion	Chr4	10449800	10449955	155
Deletion	Chr4	10452149	10452304	155
Deletion	Chr12	11719330	11719495	165
Deletion	Chr11	12520454	12520611	157
Deletion	Chr11	12521033	12521199	166
Deletion	Chr11	12523600	12523766	166
Deletion	Chr6	15743124	15743125	1
Deletion	Chr6	15749580	15749581	1
Deletion	Chr6	15750509	15750510	1
Deletion	Chr6	15750523	15750524	1
Deletion	Chr1	17199745	17199900	155
Deletion	Chr1	17284932	17284933	1
Deletion	Chr5	18675395	18675396	1
Deletion	Chr12	19381706	19381716	10
Deletion	Chr12	19639777	19639781	4	OsKitaake12g147600
Deletion	Chr3	20001977	20002132	155
Deletion	Chr3	20046701	20046856	155
Deletion	Chr3	20050721	20050876	155
Deletion	Chr3	20058944	20059409	465
Deletion	Chr6	20564524	20564534	10
Deletion	Chr12	21054678	21054680	2
Deletion	Chr6	21954658	21954659	1
Deletion	Chr12	23138541	23138542	1
Deletion	Chr5	23239191	23239201	10
Deletion	Chr2	23429427	23429436	9	OsKitaake02g229500
Deletion	Chr3	23781521	23781537	16
Deletion	Chr7	24521237	24521261	24
Deletion	Chr3	26621031	26621039	8
Deletion	Chr2	28605688	28605689	1
Deletion	Chr3	29587117	29587118	1
Deletion	Chr5	30246720	30246721	1
Deletion	Chr2	33235848	33235856	8
Deletion	Chr3	35517001	35526000	8999
Deletion	Chr1	40156569	40156575	6
Deletion	Chr1	44138646	44138654	8	OsKitaake01g492700

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	4094109	4176193
Inversion	Chr8	4094114	4176195
Inversion	Chr2	7583954	7679596	2
Inversion	Chr2	7584070	7666802	OsKitaake02g099900
Inversion	Chr1	33759873	34048605	OsKitaake01g350400
Inversion	Chr1	33831528	34048604	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes