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Mutant Information

Mutant Name	N1-169-6 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download N1-169-6 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16154904 C-T Homo INTERGENIC
SBS Chr1 20476104 C-G Homo INTERGENIC
SBS Chr1 26085850 G-A Homo INTERGENIC
SBS Chr1 32694971 A-T Homo INTERGENIC
SBS Chr1 42597663 C-T Hetero INTERGENIC
SBS Chr2 17777239 G-A Hetero INTERGENIC
SBS Chr2 30458717 A-T Homo SYNONYMOUS_CODING
SBS Chr3 27071850 G-A Homo INTERGENIC
SBS Chr3 32010501 T-A Homo INTERGENIC
SBS Chr4 5010429 G-T Hetero INTERGENIC
SBS Chr4 7539500 A-G Homo INTERGENIC
SBS Chr4 17012507 A-C Homo INTERGENIC
SBS Chr4 31659425 G-A Homo UTR_3_PRIME
SBS Chr4 31659426 C-A Homo UTR_3_PRIME
SBS Chr5 11454918 G-A Homo INTERGENIC
SBS Chr5 15669324 C-T Hetero UTR_3_PRIME
SBS Chr5 27736468 C-T Homo INTRON
SBS Chr5 27736469 G-A Homo INTRON
SBS Chr6 4173304 T-A Hetero INTERGENIC
SBS Chr6 12955525 T-A Hetero INTERGENIC
SBS Chr6 20327187 G-A Homo INTRON
SBS Chr7 14579696 G-A Hetero INTERGENIC
SBS Chr7 15285859 T-A Hetero INTERGENIC
SBS Chr8 25894459 A-T Homo INTERGENIC
SBS Chr9 5484440 T-A Homo INTERGENIC
SBS Chr10 1019831 T-A Hetero INTERGENIC
SBS Chr10 5336431 C-T Homo INTERGENIC
SBS Chr10 19567459 G-A Homo SYNONYMOUS_CODING
SBS Chr10 19580590 C-G Homo UTR_3_PRIME
SBS Chr11 5396582 T-A Homo INTERGENIC
SBS Chr11 10757463 C-A Hetero INTERGENIC
SBS Chr11 16125326 C-A Hetero INTERGENIC
SBS Chr11 26482651 G-A Homo INTERGENIC
SBS Chr12 11827347 A-T Hetero INTERGENIC
SBS Chr12 12268576 T-A Hetero INTERGENIC
SBS Chr12 15515046 A-T Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 8673574 8673740 166
Deletion Chr5 10924001 10943000 18999
Deletion Chr7 12991964 12992031 67
Deletion Chr3 20040046 20040356 310
Deletion Chr6 20564524 20564534 10
Deletion Chr4 20921387 20921394 7 OsKitaake04g114300
Deletion Chr2 21376043 21376044 1
Deletion Chr11 21657101 21657102 1 OsKitaake11g171400
Deletion Chr9 21923001 22213000 289999 63
Deletion Chr6 21954658 21954659 1
Deletion Chr5 30009022 30009373 351
Deletion Chr2 33235848 33235856 8
Deletion Chr3 35517001 35526000 8999
Deletion Chr1 40156569 40156575 6

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 30184588 30184591 2
Insertion Chr2 20550501 20550503 1

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 4094109 4176193
Inversion Chr8 4094114 4176195
Inversion Chr2 7350343 7583844 2
Inversion Chr2 7350687 7679619 OsKitaake02g100500
Inversion Chr2 7584070 7666802 OsKitaake02g099900
Inversion Chr1 33759873 34048605 OsKitaake01g350400
Inversion Chr1 33831528 34048604 2

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 6915778 Chr2 7350679 OsKitaake02g098100
Translocation Chr9 21920581 Chr4 26505278 OsKitaake04g190400
Translocation Chr9 22209709 Chr4 26505284 OsKitaake04g190400
Translocation Chr12 24424319 Chr3 10513087 2
Translocation Chr4 25617951 Chr2 7666795
Translocation Chr4 25617963 Chr2 7583858 OsKitaake02g099900
Translocation Chr11 26777634 Chr10 1084734

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16154904	C-T	Homo	INTERGENIC
SBS	Chr1	20476104	C-G	Homo	INTERGENIC
SBS	Chr1	26085850	G-A	Homo	INTERGENIC
SBS	Chr1	32694971	A-T	Homo	INTERGENIC
SBS	Chr1	42597663	C-T	Hetero	INTERGENIC
SBS	Chr2	17777239	G-A	Hetero	INTERGENIC
SBS	Chr2	30458717	A-T	Homo	SYNONYMOUS_CODING
SBS	Chr3	27071850	G-A	Homo	INTERGENIC
SBS	Chr3	32010501	T-A	Homo	INTERGENIC
SBS	Chr4	5010429	G-T	Hetero	INTERGENIC
SBS	Chr4	7539500	A-G	Homo	INTERGENIC
SBS	Chr4	17012507	A-C	Homo	INTERGENIC
SBS	Chr4	31659425	G-A	Homo	UTR_3_PRIME
SBS	Chr4	31659426	C-A	Homo	UTR_3_PRIME
SBS	Chr5	11454918	G-A	Homo	INTERGENIC
SBS	Chr5	15669324	C-T	Hetero	UTR_3_PRIME
SBS	Chr5	27736468	C-T	Homo	INTRON
SBS	Chr5	27736469	G-A	Homo	INTRON
SBS	Chr6	4173304	T-A	Hetero	INTERGENIC
SBS	Chr6	12955525	T-A	Hetero	INTERGENIC
SBS	Chr6	20327187	G-A	Homo	INTRON
SBS	Chr7	14579696	G-A	Hetero	INTERGENIC
SBS	Chr7	15285859	T-A	Hetero	INTERGENIC
SBS	Chr8	25894459	A-T	Homo	INTERGENIC
SBS	Chr9	5484440	T-A	Homo	INTERGENIC
SBS	Chr10	1019831	T-A	Hetero	INTERGENIC
SBS	Chr10	5336431	C-T	Homo	INTERGENIC
SBS	Chr10	19567459	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr10	19580590	C-G	Homo	UTR_3_PRIME
SBS	Chr11	5396582	T-A	Homo	INTERGENIC
SBS	Chr11	10757463	C-A	Hetero	INTERGENIC
SBS	Chr11	16125326	C-A	Hetero	INTERGENIC
SBS	Chr11	26482651	G-A	Homo	INTERGENIC
SBS	Chr12	11827347	A-T	Hetero	INTERGENIC
SBS	Chr12	12268576	T-A	Hetero	INTERGENIC
SBS	Chr12	15515046	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	8673574	8673740	166
Deletion	Chr5	10924001	10943000	18999
Deletion	Chr7	12991964	12992031	67
Deletion	Chr3	20040046	20040356	310
Deletion	Chr6	20564524	20564534	10
Deletion	Chr4	20921387	20921394	7	OsKitaake04g114300
Deletion	Chr2	21376043	21376044	1
Deletion	Chr11	21657101	21657102	1	OsKitaake11g171400
Deletion	Chr9	21923001	22213000	289999	63
Deletion	Chr6	21954658	21954659	1
Deletion	Chr5	30009022	30009373	351
Deletion	Chr2	33235848	33235856	8
Deletion	Chr3	35517001	35526000	8999
Deletion	Chr1	40156569	40156575	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	4094109	4176193
Inversion	Chr8	4094114	4176195
Inversion	Chr2	7350343	7583844	2
Inversion	Chr2	7350687	7679619	OsKitaake02g100500
Inversion	Chr2	7584070	7666802	OsKitaake02g099900
Inversion	Chr1	33759873	34048605	OsKitaake01g350400
Inversion	Chr1	33831528	34048604	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes