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Mutant Information

Mutant Name	W279-4-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download W279-4-1 Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 19

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20426819	A-T	Hetero	INTERGENIC
SBS	Chr1	27718407	A-T	Homo	INTERGENIC
SBS	Chr2	18712308	C-G	Hetero	INTERGENIC
SBS	Chr2	23341524	A-G	Homo	INTRON
SBS	Chr3	20074242	A-G	Homo	INTRON
SBS	Chr4	5472162	T-G	Hetero	INTERGENIC
SBS	Chr4	7676059	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	8399245	G-A	Homo	INTERGENIC
SBS	Chr4	9132074	A-G	Homo	INTERGENIC
SBS	Chr6	7746714	G-A	Hetero	INTERGENIC
SBS	Chr6	7856724	C-A	Hetero	INTERGENIC
SBS	Chr6	7856725	T-A	Hetero	INTERGENIC
SBS	Chr6	10260017	G-C	Homo	UTR_3_PRIME
SBS	Chr6	15041655	G-A	Homo	INTERGENIC
SBS	Chr6	28429392	A-G	Hetero	INTRON
SBS	Chr8	2687090	C-T	Homo	INTERGENIC
SBS	Chr9	9964511	G-A	Hetero	INTERGENIC
SBS	Chr9	15997838	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g114400
SBS	Chr12	26794059	G-A	Hetero	INTERGENIC

Deletions: 17

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	874024	874028	4
Deletion	Chr11	2763840	2763845	5
Deletion	Chr8	3270759	3270761	2
Deletion	Chr8	4149445	4149446	1
Deletion	Chr9	5880418	5880421	3
Deletion	Chr1	7880890	7880907	17
Deletion	Chr5	9126111	9126115	4
Deletion	Chr3	10751952	10752207	255
Deletion	Chr12	12306026	12306036	10
Deletion	Chr2	14369965	14369966	1	OsKitaake02g154800
Deletion	Chr11	16460642	16460653	11
Deletion	Chr4	18605241	18605253	12
Deletion	Chr8	19822441	19822442	1
Deletion	Chr1	20046069	20046074	5
Deletion	Chr2	25738729	25738734	5
Deletion	Chr4	26938001	26947000	8999	OsKitaake04g195500
Deletion	Chr7	27573803	27573804	1

Insertions: 2

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr2	4471064	4471067	2
Insertion	Chr5	4913987	4913991	3

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	25874041	26307533	2
Inversion	Chr4	36364044	36416408	2
Inversion	Chr4	36364048	36416412	2

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	14566171	Chr5	2931143
Translocation	Chr9	14566457	Chr5	2930658
Translocation	Chr4	25269493	Chr1	36146740	OsKitaake01g383400
Translocation	Chr4	26946861	Chr1	36144598	OsKitaake04g195500