Search Kitaake

Mutant Information

Mutant Name	W313-1-1-1-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download W313-1-1-1-1 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 23491908 G-T Homo INTERGENIC
SBS Chr1 41501603 T-G Homo INTERGENIC
SBS Chr1 41699234 G-A Homo NON_SYNONYMOUS_CODING OsKitaake01g455700
SBS Chr2 4750736 C-T Homo INTRON
SBS Chr2 13097101 T-C Homo INTERGENIC
SBS Chr3 9137007 G-A Homo INTERGENIC
SBS Chr3 32655990 T-A Homo INTERGENIC
SBS Chr4 5394307 G-T Hetero INTERGENIC
SBS Chr4 5466491 T-C Homo INTERGENIC
SBS Chr4 15293632 G-A Hetero INTERGENIC
SBS Chr4 34781326 G-A Homo UTR_5_PRIME
SBS Chr5 7224164 A-G Homo INTERGENIC
SBS Chr5 12679178 G-A Homo INTERGENIC
SBS Chr5 27610349 T-A Homo INTRON
SBS Chr6 14912305 G-A Homo INTERGENIC
SBS Chr6 17287692 T-A Homo INTRON
SBS Chr6 18776249 C-T Homo INTRON
SBS Chr6 31019943 A-G Homo #VALUE!
SBS Chr7 23291302 T-A Homo INTRON
SBS Chr8 21178828 G-T Homo INTERGENIC
SBS Chr9 3610152 C-T Hetero INTERGENIC
SBS Chr9 7256180 C-T Homo INTERGENIC
SBS Chr9 13147191 C-A Homo INTERGENIC
SBS Chr9 13147192 G-A Homo INTERGENIC
SBS Chr9 13147193 G-C Homo INTERGENIC
SBS Chr9 20302333 C-T Homo INTERGENIC
SBS Chr11 5774211 A-G Hetero INTERGENIC
SBS Chr11 23395796 G-T Homo NON_SYNONYMOUS_CODING OsKitaake11g186540
SBS Chr12 3052657 C-T Hetero INTERGENIC
SBS Chr12 3594761 G-A Hetero SYNONYMOUS_CODING
SBS Chr12 22763850 C-T Homo INTERGENIC
SBS Chr12 24205857 A-G Homo INTERGENIC
SBS Chr12 25111872 T-A Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 15154 15155 1
Deletion Chr9 758450 758459 9
Deletion Chr10 1256361 1256362 1
Deletion Chr9 2736177 2736178 1
Deletion Chr5 2949116 2949117 1
Deletion Chr9 3787129 3787130 1
Deletion Chr7 5619294 5619295 1
Deletion Chr5 6618953 6618955 2
Deletion Chr7 6932784 6932904 120
Deletion Chr12 9611428 9611429 1
Deletion Chr2 12526801 12526803 2
Deletion Chr9 14366625 14366715 90
Deletion Chr12 15902528 15902529 1
Deletion Chr12 17317077 17317079 2
Deletion Chr10 17332178 17332188 10
Deletion Chr12 21213694 21213703 9
Deletion Chr1 22096588 22096590 2
Deletion Chr7 28472168 28472174 6
Deletion Chr11 29059929 29059930 1

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 22205697 22205700 2
Insertion Chr6 2939074 2939077 2
Insertion Chr8 8672891 8672895 3
Insertion Chr11 11525667 11525669 1
Insertion Chr5 12402355 12402357 1
Insertion Chr5 12464015 12464017 1
Insertion Chr8 6843614 6843617 2
Insertion Chr10 11980450 11980453 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	23491908	G-T	Homo	INTERGENIC
SBS	Chr1	41501603	T-G	Homo	INTERGENIC
SBS	Chr1	41699234	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g455700
SBS	Chr2	4750736	C-T	Homo	INTRON
SBS	Chr2	13097101	T-C	Homo	INTERGENIC
SBS	Chr3	9137007	G-A	Homo	INTERGENIC
SBS	Chr3	32655990	T-A	Homo	INTERGENIC
SBS	Chr4	5394307	G-T	Hetero	INTERGENIC
SBS	Chr4	5466491	T-C	Homo	INTERGENIC
SBS	Chr4	15293632	G-A	Hetero	INTERGENIC
SBS	Chr4	34781326	G-A	Homo	UTR_5_PRIME
SBS	Chr5	7224164	A-G	Homo	INTERGENIC
SBS	Chr5	12679178	G-A	Homo	INTERGENIC
SBS	Chr5	27610349	T-A	Homo	INTRON
SBS	Chr6	14912305	G-A	Homo	INTERGENIC
SBS	Chr6	17287692	T-A	Homo	INTRON
SBS	Chr6	18776249	C-T	Homo	INTRON
SBS	Chr6	31019943	A-G	Homo	#VALUE!
SBS	Chr7	23291302	T-A	Homo	INTRON
SBS	Chr8	21178828	G-T	Homo	INTERGENIC
SBS	Chr9	3610152	C-T	Hetero	INTERGENIC
SBS	Chr9	7256180	C-T	Homo	INTERGENIC
SBS	Chr9	13147191	C-A	Homo	INTERGENIC
SBS	Chr9	13147192	G-A	Homo	INTERGENIC
SBS	Chr9	13147193	G-C	Homo	INTERGENIC
SBS	Chr9	20302333	C-T	Homo	INTERGENIC
SBS	Chr11	5774211	A-G	Hetero	INTERGENIC
SBS	Chr11	23395796	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g186540
SBS	Chr12	3052657	C-T	Hetero	INTERGENIC
SBS	Chr12	3594761	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr12	22763850	C-T	Homo	INTERGENIC
SBS	Chr12	24205857	A-G	Homo	INTERGENIC
SBS	Chr12	25111872	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	15154	15155	1
Deletion	Chr9	758450	758459	9
Deletion	Chr10	1256361	1256362	1
Deletion	Chr9	2736177	2736178	1
Deletion	Chr5	2949116	2949117	1
Deletion	Chr9	3787129	3787130	1
Deletion	Chr7	5619294	5619295	1
Deletion	Chr5	6618953	6618955	2
Deletion	Chr7	6932784	6932904	120
Deletion	Chr12	9611428	9611429	1
Deletion	Chr2	12526801	12526803	2
Deletion	Chr9	14366625	14366715	90
Deletion	Chr12	15902528	15902529	1
Deletion	Chr12	17317077	17317079	2
Deletion	Chr10	17332178	17332188	10
Deletion	Chr12	21213694	21213703	9
Deletion	Chr1	22096588	22096590	2
Deletion	Chr7	28472168	28472174	6
Deletion	Chr11	29059929	29059930	1

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes