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Mutant Information

Mutant Name	W360-2S-2 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download W360-2S-2 Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 40

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20754300	C-T	Hetero	INTERGENIC
SBS	Chr1	29283567	T-G	Hetero	INTRON
SBS	Chr1	29283568	A-T	Hetero	INTRON
SBS	Chr1	34197262	G-T	Hetero	UTR_3_PRIME
SBS	Chr3	30100460	A-G	Homo	INTERGENIC
SBS	Chr3	32385175	G-A	Homo	INTERGENIC
SBS	Chr3	34004007	T-G	Homo	INTERGENIC
SBS	Chr4	13769162	G-A	Hetero	INTERGENIC
SBS	Chr4	34226177	C-T	Hetero	INTERGENIC
SBS	Chr4	36132061	T-C	Homo	INTERGENIC
SBS	Chr5	23512347	G-T	Hetero	INTERGENIC
SBS	Chr5	25176155	C-T	Hetero	INTRON
SBS	Chr5	26815618	A-G	Homo	INTERGENIC
SBS	Chr5	26948458	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g241400
SBS	Chr6	1142516	G-A	Homo	INTERGENIC
SBS	Chr6	17778597	G-A	Homo	INTERGENIC
SBS	Chr6	27260422	G-A	Homo	INTERGENIC
SBS	Chr7	7428594	T-C	Hetero	INTERGENIC
SBS	Chr7	14525926	G-A	Hetero	INTERGENIC
SBS	Chr7	19037606	A-G	Hetero	INTERGENIC
SBS	Chr7	28604596	T-C	Homo	INTERGENIC
SBS	Chr8	4007880	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g046100
SBS	Chr8	4010801	A-T	Homo	INTERGENIC
SBS	Chr8	8238736	C-T	Homo	INTERGENIC
SBS	Chr8	9709106	C-T	Homo	INTERGENIC
SBS	Chr8	25572774	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g202100
SBS	Chr8	25572775	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g202100
SBS	Chr8	26010152	G-A	Homo	INTERGENIC
SBS	Chr9	12332803	G-A	Hetero	INTERGENIC
SBS	Chr10	2274971	C-T	Homo	INTERGENIC
SBS	Chr10	4680009	C-A	Hetero	INTERGENIC
SBS	Chr10	23652661	A-T	Hetero	INTERGENIC
SBS	Chr11	1091122	C-T	Hetero	INTERGENIC
SBS	Chr11	7442289	A-T	Hetero	INTERGENIC
SBS	Chr11	10314302	C-T	Homo	INTERGENIC
SBS	Chr12	4087971	A-G	Homo	INTERGENIC
SBS	Chr12	6284061	C-T	Homo	INTERGENIC
SBS	Chr12	15965859	G-A	Hetero	INTERGENIC
SBS	Chr12	16004032	G-A	Homo	INTERGENIC
SBS	Chr12	18766028	C-A	Homo	INTERGENIC

Deletions: 17

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	2627253	2627255	2
Deletion	Chr3	5806890	5806891	1
Deletion	Chr1	6432001	6479000	46999	5
Deletion	Chr7	10358316	10358321	5
Deletion	Chr9	14213240	14213245	5
Deletion	Chr5	16008001	16043000	34999	2
Deletion	Chr2	18211477	18211478	1
Deletion	Chr5	18595346	18595349	3
Deletion	Chr4	18758178	18758301	123
Deletion	Chr7	21578901	21578904	3
Deletion	Chr7	23154709	23154726	17	OsKitaake07g199900
Deletion	Chr8	23912439	23912445	6
Deletion	Chr3	24962576	24962581	5
Deletion	Chr5	25853517	25853519	2
Deletion	Chr3	26647958	26647972	14
Deletion	Chr11	26949885	26949893	8
Deletion	Chr3	30325001	30371000	45999	2

Insertions: 2

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr4	5839369	5839372	2
Insertion	Chr8	1227183	1227186	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	18789837	18807038	OsKitaake07g153200
Inversion	Chr7	18789848	18807042	OsKitaake07g153200

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	4268198	Chr1	6438346
Translocation	Chr5	6074872	Chr1	6477624	OsKitaake05g062901
Translocation	Chr7	13776118	Chr3	30326359
Translocation	Chr7	13776136	Chr3	30369436	OsKitaake03g318500
Translocation	Chr11	21240130	Chr5	6074858	OsKitaake05g062901
Translocation	Chr11	21641730	Chr5	6073796