Search Kitaake

Mutant Information

Mutant Name	W385-6-8-4 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download W385-6-8-4 Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 50

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5682903	G-A	Hetero	INTRON
SBS	Chr1	7615467	C-T	Hetero	INTERGENIC
SBS	Chr1	10816459	A-T	Hetero	INTERGENIC
SBS	Chr1	13454452	G-T	Hetero	INTRON
SBS	Chr1	23219124	T-A	Homo	INTERGENIC
SBS	Chr1	25806721	G-A	Hetero	INTERGENIC
SBS	Chr1	30849874	C-T	Hetero	INTERGENIC
SBS	Chr1	33172950	C-T	Homo	INTRON
SBS	Chr1	33172970	C-G	Homo	INTRON
SBS	Chr1	41957265	A-G	Homo	INTERGENIC
SBS	Chr2	1559848	C-T	Homo	INTERGENIC
SBS	Chr2	10808640	A-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g126600
SBS	Chr2	12658679	G-A	Homo	INTERGENIC
SBS	Chr2	13956789	T-C	Hetero	UTR_3_PRIME
SBS	Chr2	23355677	G-A	Hetero	INTERGENIC
SBS	Chr2	32102297	T-A	Homo	INTERGENIC
SBS	Chr3	9990901	T-C	Homo	INTERGENIC
SBS	Chr3	12568275	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g169600
SBS	Chr3	16415326	A-G	Homo	INTERGENIC
SBS	Chr4	14879968	G-A	Homo	INTRON
SBS	Chr4	30805910	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr4	36693023	T-C	Homo	INTERGENIC
SBS	Chr5	18066512	C-T	Homo	INTERGENIC
SBS	Chr5	18077756	C-A	Homo	INTERGENIC
SBS	Chr5	30223929	T-A	Hetero	INTERGENIC
SBS	Chr6	3715406	C-T	Hetero	INTERGENIC
SBS	Chr6	4614033	T-A	Hetero	INTERGENIC
SBS	Chr6	5306114	A-T	Hetero	INTERGENIC
SBS	Chr6	11727285	G-C	Hetero	INTERGENIC
SBS	Chr6	15347347	A-G	Homo	INTERGENIC
SBS	Chr6	30198170	C-T	Homo	INTERGENIC
SBS	Chr7	719571	G-A	Homo	INTERGENIC
SBS	Chr7	1136746	A-G	Homo	INTERGENIC
SBS	Chr7	12969912	C-T	Homo	INTRON
SBS	Chr7	13450073	C-T	Hetero	INTERGENIC
SBS	Chr7	14468706	C-G	Homo	INTERGENIC
SBS	Chr7	25639225	T-A	Hetero	INTERGENIC
SBS	Chr8	5134946	C-T	Homo	INTERGENIC
SBS	Chr8	6548669	G-A	Hetero	INTERGENIC
SBS	Chr8	17637052	C-T	Homo	INTERGENIC
SBS	Chr8	19152073	G-A	Homo	INTERGENIC
SBS	Chr9	4018341	C-G	Hetero	INTERGENIC
SBS	Chr10	9806552	G-A	Homo	INTERGENIC
SBS	Chr11	11712711	C-A	Homo	INTRON
SBS	Chr11	16689043	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr11	17619672	A-T	Hetero	INTERGENIC
SBS	Chr11	17619673	C-T	Hetero	INTERGENIC
SBS	Chr11	23296350	C-A	Homo	INTERGENIC
SBS	Chr11	23296351	G-A	Homo	INTERGENIC
SBS	Chr12	22168618	G-A	Hetero	INTRON

Deletions: 20

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	1325628	1325633	5
Deletion	Chr9	1529181	1529190	9
Deletion	Chr3	1887001	1917000	29999	5
Deletion	Chr4	2279001	2294000	14999	OsKitaake04g014400
Deletion	Chr3	3881472	3881475	3	OsKitaake03g055400
Deletion	Chr6	5899008	5899022	14
Deletion	Chr7	10184831	10184834	3
Deletion	Chr11	10890023	10890037	14
Deletion	Chr2	11871723	11871736	13
Deletion	Chr9	12591817	12591825	8
Deletion	Chr11	13361924	13361926	2
Deletion	Chr6	13474318	13474321	3
Deletion	Chr5	15424171	15424173	2	OsKitaake05g118300
Deletion	Chr5	15426733	15426735	2	OsKitaake05g118300
Deletion	Chr7	20575326	20575328	2
Deletion	Chr12	21549840	21549843	3
Deletion	Chr1	22202995	22203001	6
Deletion	Chr11	23299517	23299518	1
Deletion	Chr4	30034977	30034978	1
Deletion	Chr3	32854896	32854905	9

Insertions: 3

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr7	24524126	24524129	2
Insertion	Chr5	15424490	15424492	1	OsKitaake05g118300
Insertion	Chr5	15427052	15427054	1	OsKitaake05g118300

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	21374991	21483395	OsKitaake07g177600
Inversion	Chr7	21375005	21483413	OsKitaake07g177600

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	2291387	Chr3	1815861	2
Translocation	Chr11	18506751	Chr7	2754054	OsKitaake07g035600

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes