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Mutant Information

Mutant Name	W443-5-1-3 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download W443-5-1-3 Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	169064	T-A	Homo	SYNONYMOUS_CODING
SBS	Chr1	1679723	C-T	Homo	INTERGENIC
SBS	Chr1	9709747	C-T	Homo	INTERGENIC
SBS	Chr1	21115391	G-T	Homo	INTERGENIC
SBS	Chr1	37573850	T-A	Homo	INTERGENIC
SBS	Chr2	6837208	C-G	Homo	UTR_5_PRIME
SBS	Chr3	27888943	G-A	Hetero	INTERGENIC
SBS	Chr4	4259374	G-C	Hetero	INTERGENIC
SBS	Chr4	9760394	G-A	Homo	INTERGENIC
SBS	Chr4	22955654	G-C	Homo	SYNONYMOUS_CODING
SBS	Chr5	3521674	T-C	Homo	INTRON
SBS	Chr5	6754086	C-A	Hetero	INTERGENIC
SBS	Chr5	6754087	C-A	Hetero	INTERGENIC
SBS	Chr5	8691195	G-A	Homo	INTERGENIC
SBS	Chr5	8691196	A-T	Homo	INTERGENIC
SBS	Chr5	8691197	A-T	Homo	INTERGENIC
SBS	Chr6	22291971	G-T	Hetero	INTERGENIC
SBS	Chr7	527011	G-A	Homo	INTERGENIC
SBS	Chr7	4860599	T-A	Hetero	INTERGENIC
SBS	Chr7	7943585	G-A	Hetero	INTERGENIC
SBS	Chr7	23254550	A-T	Homo	INTERGENIC
SBS	Chr8	11504412	T-C	Hetero	INTERGENIC
SBS	Chr8	13763645	C-T	Hetero	INTERGENIC
SBS	Chr8	13763646	G-A	Hetero	INTERGENIC
SBS	Chr8	25271376	C-A	Homo	INTERGENIC
SBS	Chr9	3708944	A-G	Homo	INTERGENIC
SBS	Chr9	12161765	A-C	Homo	INTERGENIC
SBS	Chr9	12460280	G-C	Homo	INTERGENIC
SBS	Chr10	12675718	T-A	Homo	INTERGENIC
SBS	Chr10	12938256	T-A	Homo	INTERGENIC
SBS	Chr11	12269157	A-G	Homo	INTRON
SBS	Chr11	15939031	G-A	Homo	UTR_3_PRIME
SBS	Chr12	9408439	C-G	Homo	INTERGENIC
SBS	Chr12	23769170	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g191500

Deletions: 14

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	2120891	2120903	12
Deletion	Chr5	5893760	5893848	88
Deletion	Chr6	10242391	10242393	2
Deletion	Chr7	12330433	12330435	2
Deletion	Chr12	13809153	13809154	1
Deletion	Chr7	14186414	14186415	1
Deletion	Chr9	14382872	14382873	1
Deletion	Chr9	14951663	14951665	2
Deletion	Chr2	16184381	16184387	6
Deletion	Chr4	17573407	17573409	2
Deletion	Chr6	17601218	17601225	7
Deletion	Chr6	19735131	19735499	368
Deletion	Chr11	20421729	20421730	1
Deletion	Chr7	25406982	25407303	321

Insertions: 4

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr1	24761923	24761926	2
Insertion	Chr4	17867061	17867066	4
Insertion	Chr7	24181624	24181628	3
Insertion	Chr8	28478800	28478803	2

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	17332290	17751506	OsKitaake03g217800
Inversion	Chr3	17332294	17751508	OsKitaake03g217800
Inversion	Chr9	22430172	22430393	OsKitaake09g203600
Inversion	Chr9	22430333	22430600	OsKitaake09g203600