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| Mutant Information |
|---|
| Mutant Name | W450-6-1 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download W450-6-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 32117323 | C-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g323600 |
| SBS | Chr2 | 3429528 | A-G | Homo | INTERGENIC | |
| SBS | Chr2 | 3558246 | A-G | Homo | INTERGENIC | |
| SBS | Chr2 | 14546554 | A-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 16633833 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 30439764 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 5912432 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 15174922 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 33711710 | C-T | Homo | INTRON | |
| SBS | Chr5 | 1246535 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 1808457 | T-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 15511098 | G-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 7528880 | T-G | Homo | INTERGENIC | |
| SBS | Chr7 | 10154107 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 18722870 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 5953977 | A-T | Homo | INTRON | |
| SBS | Chr8 | 18760544 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 27185281 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 3282831 | A-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake09g017100 |
| SBS | Chr9 | 4889022 | T-C | Hetero | UTR_3_PRIME | |
| SBS | Chr9 | 7527773 | A-T | Homo | INTERGENIC | |
| SBS | Chr9 | 13028981 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 16205474 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 22849367 | A-T | Homo | INTRON | |
| SBS | Chr11 | 3457226 | G-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake11g047600 |
| SBS | Chr11 | 13045238 | C-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 14668985 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 16961499 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 24103369 | G-T | Homo | INTERGENIC | |
| SBS | Chr12 | 16831805 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 26189302 | A-G | Homo | INTERGENIC |
Deletions: 21
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 3575661 | 3575662 | 1 | |
| Deletion | Chr2 | 5603624 | 5603644 | 20 | OsKitaake02g077400 |
| Deletion | Chr9 | 5716447 | 5716538 | 91 | |
| Deletion | Chr1 | 6411100 | 6411101 | 1 | |
| Deletion | Chr3 | 6754893 | 6754895 | 2 | |
| Deletion | Chr10 | 6969539 | 6969549 | 10 | |
| Deletion | Chr2 | 8395860 | 8395861 | 1 | OsKitaake02g106600 |
| Deletion | Chr11 | 9059324 | 9059326 | 2 | |
| Deletion | Chr2 | 9090416 | 9090426 | 10 | |
| Deletion | Chr3 | 9807131 | 9807132 | 1 | |
| Deletion | Chr12 | 11718044 | 11718045 | 1 | |
| Deletion | Chr10 | 12272582 | 12272585 | 3 | |
| Deletion | Chr6 | 16185515 | 16185520 | 5 | |
| Deletion | Chr11 | 17281646 | 17281647 | 1 | |
| Deletion | Chr5 | 17497866 | 17497869 | 3 | |
| Deletion | Chr1 | 18574349 | 18574351 | 2 | |
| Deletion | Chr11 | 23432812 | 23432817 | 5 | |
| Deletion | Chr11 | 24202514 | 24202515 | 1 | |
| Deletion | Chr5 | 25029523 | 25029720 | 197 | |
| Deletion | Chr8 | 28266007 | 28266008 | 1 | |
| Deletion | Chr5 | 30165667 | 30165668 | 1 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr7 | 1635343 | 1635346 | 2 | |
| Insertion | Chr7 | 17623768 | 17623771 | 2 | |
| Insertion | Chr4 | 18215924 | 18215926 | 1 | |
| Insertion | Chr10 | 8267973 | 8267982 | 8 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 7377455 | Chr6 | 10018533 | |
| Translocation | Chr9 | 20623461 | Chr2 | 25289037 |