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Mutant Information

Mutant Name	W453-3-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download W453-3-1 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2737253 T-A Hetero INTERGENIC
SBS Chr1 20698110 A-T Homo INTRON
SBS Chr1 31824487 C-T Homo INTERGENIC
SBS Chr1 41124008 G-A Hetero INTERGENIC
SBS Chr2 6405401 G-A Homo INTERGENIC
SBS Chr2 19113796 C-T Homo INTRON
SBS Chr2 27268251 T-A Homo INTERGENIC
SBS Chr3 161370 G-C Homo INTERGENIC
SBS Chr3 12001961 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g163200
SBS Chr3 18187569 C-T Homo INTERGENIC
SBS Chr3 20167796 G-A Homo INTERGENIC
SBS Chr3 31363117 T-C Homo INTERGENIC
SBS Chr3 32214543 T-C Hetero INTERGENIC
SBS Chr4 5778956 G-C Hetero INTERGENIC
SBS Chr4 18240935 A-C Hetero INTERGENIC
SBS Chr5 12152179 C-T Homo INTERGENIC
SBS Chr5 22219433 G-A Hetero INTERGENIC
SBS Chr5 25851817 G-A Homo INTERGENIC
SBS Chr6 6174252 C-T Hetero INTERGENIC
SBS Chr6 7100758 C-T Hetero INTERGENIC
SBS Chr6 15027570 G-C Hetero INTERGENIC
SBS Chr7 11548312 T-A Homo INTERGENIC
SBS Chr8 1034985 G-A Hetero INTERGENIC
SBS Chr8 9401287 C-T Homo INTERGENIC
SBS Chr8 14216964 C-T Hetero INTERGENIC
SBS Chr8 19404422 C-T Homo INTERGENIC
SBS Chr8 21314519 C-T Homo INTERGENIC
SBS Chr9 3986787 G-A Homo SYNONYMOUS_CODING
SBS Chr9 5613852 G-C Homo INTERGENIC
SBS Chr9 10199808 A-T Homo INTERGENIC
SBS Chr9 10288992 A-T Homo INTRON
SBS Chr9 10396580 T-C Homo INTERGENIC
SBS Chr9 10396581 C-A Homo INTERGENIC
SBS Chr10 7384750 G-T Homo INTRON
SBS Chr10 15561477 C-A Hetero INTERGENIC
SBS Chr10 22383895 T-C Hetero INTERGENIC
SBS Chr11 4961388 G-A Hetero INTERGENIC
SBS Chr12 8909414 G-A Hetero INTERGENIC
SBS Chr12 12466451 G-A Hetero INTERGENIC
SBS Chr12 18606518 T-C Hetero INTERGENIC
SBS Chr12 21097493 G-A Hetero INTERGENIC
SBS Chr12 22307474 G-C Hetero INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 809653 809655 2
Deletion Chr1 1184310 1184317 7
Deletion Chr4 3663461 3663470 9 OsKitaake04g017950
Deletion Chr6 3952855 3952857 2
Deletion Chr5 9532774 9532775 1
Deletion Chr1 9674195 9674201 6
Deletion Chr9 9962555 9962565 10
Deletion Chr5 14085047 14085048 1
Deletion Chr7 17501331 17501408 77
Deletion Chr4 18547886 18547888 2
Deletion Chr3 18900001 18915000 14999
Deletion Chr2 20648634 20648638 4
Deletion Chr4 20958948 20958957 9
Deletion Chr7 21976534 21976536 2
Deletion Chr10 22208959 22208965 6
Deletion Chr8 22451232 22451234 2
Deletion Chr11 26659983 26660376 393
Deletion Chr11 28335974 28335975 1 OsKitaake11g232501
Deletion Chr2 28801812 28801814 2
Deletion Chr11 28896924 28896991 67
Deletion Chr3 36614366 36614368 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 14519147 14519150 2
Insertion Chr8 3379517 3379520 2
Insertion Chr9 9806528 9806530 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 2005013 2272026 OsKitaake10g018300
Inversion Chr3 36063029 36797647 OsKitaake03g410600
Inversion Chr3 36063036 36797648 OsKitaake03g410600

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 12633265 Chr2 14204759

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2737253	T-A	Hetero	INTERGENIC
SBS	Chr1	20698110	A-T	Homo	INTRON
SBS	Chr1	31824487	C-T	Homo	INTERGENIC
SBS	Chr1	41124008	G-A	Hetero	INTERGENIC
SBS	Chr2	6405401	G-A	Homo	INTERGENIC
SBS	Chr2	19113796	C-T	Homo	INTRON
SBS	Chr2	27268251	T-A	Homo	INTERGENIC
SBS	Chr3	161370	G-C	Homo	INTERGENIC
SBS	Chr3	12001961	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g163200
SBS	Chr3	18187569	C-T	Homo	INTERGENIC
SBS	Chr3	20167796	G-A	Homo	INTERGENIC
SBS	Chr3	31363117	T-C	Homo	INTERGENIC
SBS	Chr3	32214543	T-C	Hetero	INTERGENIC
SBS	Chr4	5778956	G-C	Hetero	INTERGENIC
SBS	Chr4	18240935	A-C	Hetero	INTERGENIC
SBS	Chr5	12152179	C-T	Homo	INTERGENIC
SBS	Chr5	22219433	G-A	Hetero	INTERGENIC
SBS	Chr5	25851817	G-A	Homo	INTERGENIC
SBS	Chr6	6174252	C-T	Hetero	INTERGENIC
SBS	Chr6	7100758	C-T	Hetero	INTERGENIC
SBS	Chr6	15027570	G-C	Hetero	INTERGENIC
SBS	Chr7	11548312	T-A	Homo	INTERGENIC
SBS	Chr8	1034985	G-A	Hetero	INTERGENIC
SBS	Chr8	9401287	C-T	Homo	INTERGENIC
SBS	Chr8	14216964	C-T	Hetero	INTERGENIC
SBS	Chr8	19404422	C-T	Homo	INTERGENIC
SBS	Chr8	21314519	C-T	Homo	INTERGENIC
SBS	Chr9	3986787	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr9	5613852	G-C	Homo	INTERGENIC
SBS	Chr9	10199808	A-T	Homo	INTERGENIC
SBS	Chr9	10288992	A-T	Homo	INTRON
SBS	Chr9	10396580	T-C	Homo	INTERGENIC
SBS	Chr9	10396581	C-A	Homo	INTERGENIC
SBS	Chr10	7384750	G-T	Homo	INTRON
SBS	Chr10	15561477	C-A	Hetero	INTERGENIC
SBS	Chr10	22383895	T-C	Hetero	INTERGENIC
SBS	Chr11	4961388	G-A	Hetero	INTERGENIC
SBS	Chr12	8909414	G-A	Hetero	INTERGENIC
SBS	Chr12	12466451	G-A	Hetero	INTERGENIC
SBS	Chr12	18606518	T-C	Hetero	INTERGENIC
SBS	Chr12	21097493	G-A	Hetero	INTERGENIC
SBS	Chr12	22307474	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	809653	809655	2
Deletion	Chr1	1184310	1184317	7
Deletion	Chr4	3663461	3663470	9	OsKitaake04g017950
Deletion	Chr6	3952855	3952857	2
Deletion	Chr5	9532774	9532775	1
Deletion	Chr1	9674195	9674201	6
Deletion	Chr9	9962555	9962565	10
Deletion	Chr5	14085047	14085048	1
Deletion	Chr7	17501331	17501408	77
Deletion	Chr4	18547886	18547888	2
Deletion	Chr3	18900001	18915000	14999
Deletion	Chr2	20648634	20648638	4
Deletion	Chr4	20958948	20958957	9
Deletion	Chr7	21976534	21976536	2
Deletion	Chr10	22208959	22208965	6
Deletion	Chr8	22451232	22451234	2
Deletion	Chr11	26659983	26660376	393
Deletion	Chr11	28335974	28335975	1	OsKitaake11g232501
Deletion	Chr2	28801812	28801814	2
Deletion	Chr11	28896924	28896991	67
Deletion	Chr3	36614366	36614368	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	2005013	2272026	OsKitaake10g018300
Inversion	Chr3	36063029	36797647	OsKitaake03g410600
Inversion	Chr3	36063036	36797648	OsKitaake03g410600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes