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| Mutant Information |
|---|
| Mutant Name | W464-2-1 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download W464-2-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 38
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 5999788 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr2 | 7942572 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 15092712 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr2 | 19776371 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 19776373 | C-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 32013028 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 3449330 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 12710192 | T-A | Homo | INTRON | |
| SBS | Chr3 | 16409563 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 21868941 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g239900 |
| SBS | Chr3 | 30638678 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 3441685 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 11434918 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 16463598 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 26841542 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 29038454 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 35305315 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 16216754 | G-A | Hetero | INTRON | |
| SBS | Chr6 | 16379847 | G-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr7 | 4183132 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g052900 |
| SBS | Chr7 | 7834488 | A-T | Homo | INTERGENIC | |
| SBS | Chr7 | 14834828 | C-A | Homo | INTERGENIC | |
| SBS | Chr7 | 24166117 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 27539564 | A-G | Homo | SYNONYMOUS_CODING | |
| SBS | Chr8 | 6086861 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 12552103 | C-G | Homo | UTR_5_PRIME | |
| SBS | Chr9 | 7669237 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 9782056 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 11248527 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 5561394 | G-A | Homo | INTRON | |
| SBS | Chr10 | 9324310 | C-T | Hetero | INTRON | |
| SBS | Chr10 | 10952309 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 11202773 | A-G | Homo | INTERGENIC | |
| SBS | Chr11 | 6659979 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 8246583 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 17059653 | A-C | Homo | INTRON | |
| SBS | Chr11 | 22201169 | A-T | Homo | INTERGENIC | |
| SBS | Chr11 | 25410035 | A-G | Homo | INTERGENIC |
Deletions: 16
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 2835049 | 2835053 | 4 | |
| Deletion | Chr3 | 3712737 | 3712739 | 2 | |
| Deletion | Chr10 | 12600031 | 12600032 | 1 | |
| Deletion | Chr8 | 14075870 | 14075871 | 1 | |
| Deletion | Chr7 | 14554396 | 14554597 | 201 | |
| Deletion | Chr7 | 15579629 | 15579632 | 3 | |
| Deletion | Chr3 | 16779475 | 16779476 | 1 | |
| Deletion | Chr6 | 17098780 | 17098781 | 1 | |
| Deletion | Chr4 | 20651275 | 20651277 | 2 | |
| Deletion | Chr4 | 21837001 | 21894000 | 56999 | 7 |
| Deletion | Chr7 | 21950833 | 21950837 | 4 | |
| Deletion | Chr1 | 24603759 | 24603765 | 6 | OsKitaake01g237700 |
| Deletion | Chr6 | 26251087 | 26251089 | 2 | |
| Deletion | Chr1 | 26737332 | 26737345 | 13 | |
| Deletion | Chr1 | 36200647 | 36200648 | 1 | |
| Deletion | Chr1 | 36354289 | 36354293 | 4 | OsKitaake01g386000 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 5208074 | 5208077 | 2 | |
| Insertion | Chr5 | 20710296 | 20710300 | 3 | |
| Insertion | Chr6 | 27023257 | 27023260 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 7885842 | 8214680 | OsKitaake03g109400 |
| Inversion | Chr3 | 7885844 | 8214682 | OsKitaake03g109400 |
Translocations: 6
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 9596647 | Chr4 | 12702826 | OsKitaake04g209400 |
| Translocation | Chr10 | 9596650 | Chr4 | 12702619 | OsKitaake04g209400 |
| Translocation | Chr4 | 12702612 | Chr3 | 3258801 | 2 |
| Translocation | Chr11 | 19839405 | Chr4 | 12706328 | 2 |
| Translocation | Chr11 | 19839413 | Chr4 | 12704860 | 2 |
| Translocation | Chr4 | 35869356 | Chr3 | 3057378 | OsKitaake04g307300 |