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Mutant Information

Mutant Name	W500-4-7-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download W500-4-7-1 Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25570543	G-A	Homo	START_GAINED
SBS	Chr1	26566832	C-T	Hetero	INTERGENIC
SBS	Chr2	24944243	C-T	Homo	INTERGENIC
SBS	Chr2	29631050	G-C	Homo	SYNONYMOUS_CODING
SBS	Chr3	6994096	G-T	Hetero	INTERGENIC
SBS	Chr3	7837425	G-T	Homo	INTERGENIC
SBS	Chr3	16105484	C-G	Homo	INTERGENIC
SBS	Chr3	31305442	C-T	Homo	INTRON
SBS	Chr4	9390524	C-T	Hetero	INTERGENIC
SBS	Chr4	11227197	G-A	Hetero	INTERGENIC
SBS	Chr4	12107670	C-A	Homo	INTERGENIC
SBS	Chr5	12814724	G-A	Homo	INTERGENIC
SBS	Chr5	13027989	C-T	Homo	INTERGENIC
SBS	Chr5	16686600	A-T	Homo	INTRON
SBS	Chr6	22661721	C-T	Hetero	INTERGENIC
SBS	Chr6	29843047	G-A	Hetero	INTERGENIC
SBS	Chr7	8476191	A-G	Homo	SYNONYMOUS_CODING
SBS	Chr7	10429869	G-A	Homo	INTERGENIC
SBS	Chr7	10731124	G-A	Homo	INTERGENIC
SBS	Chr7	24488824	C-T	Homo	INTERGENIC
SBS	Chr9	1449860	T-A	Hetero	INTERGENIC
SBS	Chr9	3907507	C-T	Hetero	INTERGENIC
SBS	Chr9	14670116	G-T	Hetero	INTERGENIC
SBS	Chr10	4867106	G-C	Homo	INTERGENIC
SBS	Chr10	7802658	G-A	Homo	INTERGENIC
SBS	Chr10	18212599	T-C	Homo	INTERGENIC
SBS	Chr11	1789496	A-T	Homo	INTERGENIC
SBS	Chr11	5603546	G-A	Homo	INTERGENIC
SBS	Chr11	10674891	G-A	Homo	INTRON
SBS	Chr11	17859240	T-C	Hetero	INTERGENIC
SBS	Chr12	11771960	G-A	Homo	INTERGENIC
SBS	Chr12	20866348	G-T	Hetero	INTERGENIC

Deletions: 18

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	2487516	2487521	5
Deletion	Chr8	4413654	4413658	4
Deletion	Chr4	5050464	5050465	1
Deletion	Chr3	6542031	6542043	12
Deletion	Chr3	8820858	8820860	2
Deletion	Chr8	13924848	13924849	1
Deletion	Chr4	14172643	14172649	6
Deletion	Chr7	14682092	14682093	1
Deletion	Chr10	15542356	15542357	1
Deletion	Chr5	16659868	16659871	3
Deletion	Chr8	20406090	20406097	7
Deletion	Chr2	22738257	22738261	4
Deletion	Chr1	23692627	23692628	1
Deletion	Chr6	25050255	25050473	218	OsKitaake06g222100
Deletion	Chr8	25328232	25328238	6	OsKitaake08g198200
Deletion	Chr11	25459001	25566000	106999	8
Deletion	Chr11	28238316	28238319	3
Deletion	Chr1	35261012	35261025	13	OsKitaake01g371500

Insertions: 4

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr4	262027	262030	2
Insertion	Chr4	3580640	3580643	2
Insertion	Chr4	33811815	33811817	1	OsKitaake04g281300
Insertion	Chr11	1137612	1137614	1

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	11832364	Chr5	4771502