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| Mutant Information |
|---|
| Mutant Name | W554-1-1 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download W554-1-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 5837900 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 20480098 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 23172242 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 23172243 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 28985333 | T-C | Homo | INTERGENIC | |
| SBS | Chr2 | 773886 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g010800 |
| SBS | Chr2 | 5770635 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 7064522 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 9987390 | A-G | Hetero | INTRON | |
| SBS | Chr2 | 19633011 | G-C | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 22277646 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 22475265 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 35527572 | C-T | Homo | INTRON | |
| SBS | Chr4 | 26247929 | G-A | Homo | INTRON | |
| SBS | Chr4 | 27689217 | T-A | Homo | INTERGENIC | |
| SBS | Chr5 | 16127786 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 17049544 | G-C | Hetero | SPLICE_SITE_DONOR | OsKitaake05g131200 |
| SBS | Chr5 | 19523014 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr5 | 28274141 | T-G | Homo | UTR_5_PRIME | |
| SBS | Chr7 | 28670406 | G-C | Homo | INTERGENIC | |
| SBS | Chr8 | 5582655 | T-A | Homo | INTERGENIC | |
| SBS | Chr10 | 10770606 | C-T | Homo | INTRON | |
| SBS | Chr11 | 24047073 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 25551979 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 25883402 | A-T | Hetero | UTR_3_PRIME | |
| SBS | Chr12 | 14094752 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g114500 |
| SBS | Chr12 | 14251491 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 18628284 | G-C | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr12 | 24621990 | C-T | Homo | INTRON | |
| SBS | Chr12 | 24621991 | C-T | Homo | INTRON |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 1553196 | 1553263 | 67 | |
| Deletion | Chr11 | 2860573 | 2860576 | 3 | |
| Deletion | Chr4 | 3627910 | 3627911 | 1 | |
| Deletion | Chr4 | 3750985 | 3750986 | 1 | |
| Deletion | Chr4 | 4097772 | 4097789 | 17 | |
| Deletion | Chr5 | 5355409 | 5355415 | 6 | |
| Deletion | Chr10 | 8670277 | 8670443 | 166 | |
| Deletion | Chr9 | 9524135 | 9524141 | 6 | |
| Deletion | Chr4 | 10082758 | 10082770 | 12 | OsKitaake04g054100 |
| Deletion | Chr12 | 10676991 | 10676992 | 1 | |
| Deletion | Chr12 | 18637001 | 19161000 | 523999 | 50 |
| Deletion | Chr12 | 19320001 | 19659000 | 338999 | 37 |
| Deletion | Chr12 | 24622959 | 24622971 | 12 | |
| Deletion | Chr12 | 24840164 | 24840166 | 2 | |
| Deletion | Chr1 | 41383164 | 41383173 | 9 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 27047554 | 27047557 | 2 | |
| Insertion | Chr5 | 12633210 | 12633212 | 1 | |
| Insertion | Chr8 | 11785930 | 11785932 | 1 |