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Mutant Information

Mutant Name	W596-1-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download W596-1-1 Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 21

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr4	5492733	A-G	Homo	INTERGENIC
SBS	Chr4	5493906	T-C	Homo	INTERGENIC
SBS	Chr4	17326054	A-T	Homo	INTRON
SBS	Chr4	26333726	C-G	Hetero	INTERGENIC
SBS	Chr5	13890914	T-A	Hetero	INTERGENIC
SBS	Chr5	14377363	C-T	Hetero	INTERGENIC
SBS	Chr5	23880002	C-T	Homo	INTERGENIC
SBS	Chr5	30201984	A-T	Hetero	INTERGENIC
SBS	Chr6	3409957	A-G	Hetero	INTERGENIC
SBS	Chr6	18732531	C-T	Hetero	INTERGENIC
SBS	Chr6	20797425	T-A	Homo	INTRON
SBS	Chr6	26782471	G-A	Homo	INTERGENIC
SBS	Chr7	694331	G-A	Homo	INTERGENIC
SBS	Chr8	12767773	G-C	Hetero	INTERGENIC
SBS	Chr8	16026494	C-T	Hetero	INTERGENIC
SBS	Chr9	6101530	G-A	Hetero	INTERGENIC
SBS	Chr9	16397401	G-A	Hetero	INTERGENIC
SBS	Chr10	16238916	T-A	Hetero	INTERGENIC
SBS	Chr11	1736913	C-T	Homo	INTERGENIC
SBS	Chr11	13845908	T-G	Homo	INTERGENIC
SBS	Chr11	29382583	A-C	Hetero	UTR_3_PRIME

Deletions: 16

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	5218001	5255000	36999	OsKitaake10g037500
Deletion	Chr6	9539295	9539299	4
Deletion	Chr11	9812632	9812633	1
Deletion	Chr12	12932266	12932267	1
Deletion	Chr4	13171382	13171383	1
Deletion	Chr11	13852758	13852765	7
Deletion	Chr7	14141865	14141867	2	OsKitaake07g122200
Deletion	Chr8	15835014	15835016	2
Deletion	Chr2	16283309	16283311	2
Deletion	Chr7	18212405	18212407	2
Deletion	Chr8	20002833	20002834	1
Deletion	Chr1	21788083	21788089	6
Deletion	Chr7	22403746	22403750	4
Deletion	Chr8	26434001	26627000	192999	26
Deletion	Chr1	32964625	32964626	1
Deletion	Chr1	41524001	41626000	101999	13

Insertions: 3

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr9	22028815	22028818	2
Insertion	Chr4	2728023	2728026	2
Insertion	Chr5	30219464	30219472	7

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	5205492	5217983
Inversion	Chr10	5205498	5252864
Inversion	Chr1	41525024	41864153
Inversion	Chr1	41618395	41864167