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Mutant Information |
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Mutant Name | W60-4s [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download W60-4s Alignment File |
Seed Availability | Yes [Order Seeds] |
Variant Information |
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Single base substitutions: 47
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
SBS | Chr1 | 3473667 | G-T | Hetero | INTERGENIC | |
SBS | Chr1 | 5969678 | C-T | Hetero | INTERGENIC | |
SBS | Chr1 | 10055456 | A-G | Homo | INTRON | |
SBS | Chr1 | 24866738 | C-T | Hetero | INTERGENIC | |
SBS | Chr1 | 29835835 | T-C | Hetero | INTERGENIC | |
SBS | Chr1 | 30326355 | C-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g298900 |
SBS | Chr1 | 39305625 | G-A | Homo | INTERGENIC | |
SBS | Chr1 | 40883787 | G-T | Homo | INTERGENIC | |
SBS | Chr1 | 41372170 | T-A | Homo | INTERGENIC | |
SBS | Chr1 | 44261305 | C-A | Hetero | INTRON | |
SBS | Chr2 | 141353 | G-A | Hetero | UTR_3_PRIME | |
SBS | Chr2 | 5555533 | T-A | Homo | INTERGENIC | |
SBS | Chr2 | 18911765 | T-A | Homo | INTERGENIC | |
SBS | Chr2 | 19016251 | C-A | Hetero | INTERGENIC | |
SBS | Chr2 | 30316476 | G-A | Homo | UTR_3_PRIME | |
SBS | Chr2 | 31551056 | G-A | Homo | INTERGENIC | |
SBS | Chr2 | 34586651 | A-C | Homo | INTERGENIC | |
SBS | Chr3 | 4960579 | A-G | Hetero | INTRON | |
SBS | Chr3 | 24658572 | C-A | Hetero | INTERGENIC | |
SBS | Chr3 | 25338945 | C-T | Hetero | INTERGENIC | |
SBS | Chr3 | 29458443 | C-T | Homo | INTERGENIC | |
SBS | Chr3 | 30522397 | C-A | Homo | INTERGENIC | |
SBS | Chr3 | 30787236 | C-G | Homo | INTERGENIC | |
SBS | Chr4 | 21361073 | C-T | Hetero | INTERGENIC | |
SBS | Chr4 | 21736300 | G-T | Hetero | INTERGENIC | |
SBS | Chr4 | 25027810 | G-A | Hetero | INTERGENIC | |
SBS | Chr4 | 36301456 | T-A | Hetero | INTERGENIC | |
SBS | Chr5 | 10813697 | C-A | Hetero | INTERGENIC | |
SBS | Chr5 | 16299857 | C-G | Homo | SPLICE_SITE_DONOR | OsKitaake05g124500 |
SBS | Chr6 | 1372801 | A-G | Hetero | INTERGENIC | |
SBS | Chr6 | 5573902 | G-T | Hetero | INTERGENIC | |
SBS | Chr6 | 12526400 | T-C | Hetero | UTR_3_PRIME | |
SBS | Chr6 | 14129036 | T-A | Hetero | UTR_5_PRIME | |
SBS | Chr6 | 14129037 | C-A | Hetero | UTR_5_PRIME | |
SBS | Chr7 | 23879361 | A-G | Homo | INTERGENIC | |
SBS | Chr8 | 15453745 | A-G | Homo | INTERGENIC | |
SBS | Chr9 | 5231110 | A-T | Hetero | INTERGENIC | |
SBS | Chr9 | 16738469 | T-A | Homo | INTERGENIC | |
SBS | Chr9 | 21129377 | C-T | Homo | INTRON | |
SBS | Chr10 | 10998092 | C-T | Hetero | INTERGENIC | |
SBS | Chr10 | 17552741 | C-T | Hetero | UTR_5_PRIME | |
SBS | Chr10 | 23184054 | G-A | Hetero | INTERGENIC | |
SBS | Chr11 | 6431602 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g076500 |
SBS | Chr11 | 7289939 | C-T | Hetero | INTERGENIC | |
SBS | Chr11 | 7289940 | T-A | Hetero | INTERGENIC | |
SBS | Chr12 | 11300863 | C-G | Hetero | INTERGENIC | |
SBS | Chr12 | 26781851 | T-A | Hetero | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Deletion | Chr3 | 7410115 | 7410117 | 2 | |
Deletion | Chr9 | 12285234 | 12285235 | 1 | |
Deletion | Chr11 | 12459798 | 12459799 | 1 | |
Deletion | Chr1 | 13426472 | 13426481 | 9 | |
Deletion | Chr3 | 14422480 | 14422487 | 7 | |
Deletion | Chr1 | 14736758 | 14736765 | 7 | |
Deletion | Chr1 | 19561677 | 19561682 | 5 | |
Deletion | Chr1 | 22005886 | 22005887 | 1 | |
Deletion | Chr1 | 22205464 | 22205477 | 13 | OsKitaake01g212300 |
Deletion | Chr2 | 24483515 | 24483516 | 1 | |
Deletion | Chr12 | 26505219 | 26505221 | 2 | |
Deletion | Chr4 | 27248140 | 27248142 | 2 | |
Deletion | Chr5 | 30123414 | 30123768 | 354 | |
Deletion | Chr1 | 42559001 | 42644000 | 84999 | 16 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Insertion | Chr11 | 7828448 | 7828454 | 5 | |
Insertion | Chr12 | 22577639 | 22577642 | 2 | |
Insertion | Chr5 | 29287059 | 29287062 | 2 | |
Insertion | Chr7 | 14345184 | 14345186 | 1 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
Translocation | Chr10 | 14139044 | Chr5 | 18317549 | OsKitaake10g087900 |