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Mutant Information 

Mutant NameW60-4s  [Download]
Generation M2
Genus Species Oryza Sativa
Cultivar Kitaake
Alignment File (BAM File) Download W60-4s Alignment File
Seed Availability Yes [Order Seeds]


Variant Information 

Single base substitutions: 47

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS  Chr13473667G-THeteroINTERGENIC
SBS  Chr15969678C-THeteroINTERGENIC
SBS  Chr110055456A-GHomoINTRON
SBS  Chr124866738C-THeteroINTERGENIC
SBS  Chr129835835T-CHeteroINTERGENIC
SBS  Chr130326355C-GHeteroNON_SYNONYMOUS_CODINGOsKitaake01g298900
SBS  Chr139305625G-AHomoINTERGENIC
SBS  Chr140883787G-THomoINTERGENIC
SBS  Chr141372170T-AHomoINTERGENIC
SBS  Chr144261305C-AHeteroINTRON
SBS  Chr2141353G-AHeteroUTR_3_PRIME
SBS  Chr25555533T-AHomoINTERGENIC
SBS  Chr218911765T-AHomoINTERGENIC
SBS  Chr219016251C-AHeteroINTERGENIC
SBS  Chr230316476G-AHomoUTR_3_PRIME
SBS  Chr231551056G-AHomoINTERGENIC
SBS  Chr234586651A-CHomoINTERGENIC
SBS  Chr34960579A-GHeteroINTRON
SBS  Chr324658572C-AHeteroINTERGENIC
SBS  Chr325338945C-THeteroINTERGENIC
SBS  Chr329458443C-THomoINTERGENIC
SBS  Chr330522397C-AHomoINTERGENIC
SBS  Chr330787236C-GHomoINTERGENIC
SBS  Chr421361073C-THeteroINTERGENIC
SBS  Chr421736300G-THeteroINTERGENIC
SBS  Chr425027810G-AHeteroINTERGENIC
SBS  Chr436301456T-AHeteroINTERGENIC
SBS  Chr510813697C-AHeteroINTERGENIC
SBS  Chr516299857C-GHomoSPLICE_SITE_DONOROsKitaake05g124500
SBS  Chr61372801A-GHeteroINTERGENIC
SBS  Chr65573902G-THeteroINTERGENIC
SBS  Chr612526400T-CHeteroUTR_3_PRIME
SBS  Chr614129036T-AHeteroUTR_5_PRIME
SBS  Chr614129037C-AHeteroUTR_5_PRIME
SBS  Chr723879361A-GHomoINTERGENIC
SBS  Chr815453745A-GHomoINTERGENIC
SBS  Chr95231110A-THeteroINTERGENIC
SBS  Chr916738469T-AHomoINTERGENIC
SBS  Chr921129377C-THomoINTRON
SBS  Chr1010998092C-THeteroINTERGENIC
SBS  Chr1017552741C-THeteroUTR_5_PRIME
SBS  Chr1023184054G-AHeteroINTERGENIC
SBS  Chr116431602A-GHeteroNON_SYNONYMOUS_CODINGOsKitaake11g076500
SBS  Chr117289939C-THeteroINTERGENIC
SBS  Chr117289940T-AHeteroINTERGENIC
SBS  Chr1211300863C-GHeteroINTERGENIC
SBS  Chr1226781851T-AHeteroINTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion  Chr3741011574101172
Deletion  Chr912285234122852351
Deletion  Chr1112459798124597991
Deletion  Chr113426472134264819
Deletion  Chr314422480144224877
Deletion  Chr114736758147367657
Deletion  Chr119561677195616825
Deletion  Chr122005886220058871
Deletion  Chr1222054642220547713OsKitaake01g212300
Deletion  Chr224483515244835161
Deletion  Chr1226505219265052212
Deletion  Chr427248140272481422
Deletion  Chr53012341430123768354
Deletion  Chr142559001426440008499916

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion  Chr11782844878284545
Insertion  Chr1222577639225776422
Insertion  Chr529287059292870622
Insertion  Chr714345184143451861

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation  Chr1014139044Chr518317549OsKitaake10g087900