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Mutant Information

Mutant Name	W674-4-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download W674-4-1 Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 37

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3384041	G-A	Homo	INTRON
SBS	Chr1	22126960	G-A	Hetero	INTERGENIC
SBS	Chr1	28194282	C-A	Hetero	INTERGENIC
SBS	Chr2	2723195	C-A	Hetero	INTERGENIC
SBS	Chr2	7374887	G-A	Hetero	INTERGENIC
SBS	Chr2	21397053	C-G	Hetero	INTERGENIC
SBS	Chr2	27342899	T-G	Hetero	INTERGENIC
SBS	Chr2	31126006	G-T	Homo	INTRON
SBS	Chr3	8857556	G-A	Homo	INTERGENIC
SBS	Chr4	4051985	T-C	Hetero	INTERGENIC
SBS	Chr4	7076042	C-A	Hetero	INTERGENIC
SBS	Chr4	17690847	G-A	Hetero	INTERGENIC
SBS	Chr4	18454315	G-A	Hetero	INTERGENIC
SBS	Chr4	18568028	A-C	Hetero	INTERGENIC
SBS	Chr4	30151371	G-A	Hetero	INTERGENIC
SBS	Chr5	8362094	C-G	Hetero	INTERGENIC
SBS	Chr5	11595145	C-T	Homo	INTERGENIC
SBS	Chr7	16758791	C-T	Hetero	INTERGENIC
SBS	Chr7	16955877	A-T	Hetero	INTRON
SBS	Chr7	27467847	A-T	Homo	INTERGENIC
SBS	Chr7	27467849	A-T	Homo	INTERGENIC
SBS	Chr7	27467850	A-T	Homo	INTERGENIC
SBS	Chr7	29406399	C-T	Homo	INTERGENIC
SBS	Chr8	23499008	A-T	Hetero	INTERGENIC
SBS	Chr9	1810979	C-T	Hetero	INTERGENIC
SBS	Chr9	2174882	C-T	Hetero	INTERGENIC
SBS	Chr9	7606269	A-T	Hetero	INTERGENIC
SBS	Chr9	11792220	G-A	Hetero	INTERGENIC
SBS	Chr10	4750888	A-T	Hetero	INTRON
SBS	Chr10	8764188	T-C	Hetero	INTERGENIC
SBS	Chr10	12934959	T-C	Hetero	INTERGENIC
SBS	Chr10	15445834	T-C	Hetero	INTERGENIC
SBS	Chr10	15622340	C-A	Hetero	INTERGENIC
SBS	Chr11	11167776	C-T	Homo	INTERGENIC
SBS	Chr11	12324725	C-T	Homo	INTERGENIC
SBS	Chr11	20751685	G-A	Homo	INTERGENIC
SBS	Chr12	26826734	C-A	Hetero	INTERGENIC

Deletions: 14

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	1868498	1868504	6
Deletion	Chr5	2210665	2210673	8
Deletion	Chr3	6241001	6251000	9999	4
Deletion	Chr8	6949879	6949880	1
Deletion	Chr4	9480408	9480580	172
Deletion	Chr8	11877686	11877693	7
Deletion	Chr9	14078782	14078783	1
Deletion	Chr3	14948699	14948702	3
Deletion	Chr2	17289120	17289121	1
Deletion	Chr6	17660001	17693000	32999	3
Deletion	Chr5	21560111	21560119	8
Deletion	Chr12	21663065	21663067	2
Deletion	Chr5	22318001	22329000	10999	OsKitaake05g182500
Deletion	Chr4	25079318	25079321	3

Insertions: 2

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr1	36723632	36723635	2
Insertion	Chr3	12176623	12176626	2