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| Mutant Information |
|---|
| Mutant Name | W721-2-1 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download W721-2-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 33
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 5222555 | A-T | Homo | UTR_3_PRIME | |
| SBS | Chr1 | 38623058 | A-G | Hetero | UTR_3_PRIME | |
| SBS | Chr2 | 5781351 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 18513352 | A-T | Homo | INTERGENIC | |
| SBS | Chr2 | 18867178 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 21594369 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 25753719 | A-T | Homo | INTERGENIC | |
| SBS | Chr3 | 11350049 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 12027963 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 15198086 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 9020466 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 15905422 | A-T | Homo | UTR_5_PRIME | |
| SBS | Chr5 | 17087907 | C-T | Homo | INTRON | |
| SBS | Chr6 | 1119921 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 6970218 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g090400 |
| SBS | Chr6 | 13114725 | G-T | Homo | INTERGENIC | |
| SBS | Chr6 | 13114727 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 13114731 | A-T | Homo | INTERGENIC | |
| SBS | Chr7 | 2688708 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 3237123 | C-A | Homo | INTERGENIC | |
| SBS | Chr8 | 12693563 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 20822537 | C-T | Hetero | INTRON | |
| SBS | Chr10 | 5262252 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 5085935 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 14215224 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 15907521 | A-C | Hetero | INTRON | |
| SBS | Chr11 | 19306595 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 21198909 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 29537675 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 4181573 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 8651014 | C-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 16432487 | A-T | Homo | INTERGENIC | |
| SBS | Chr12 | 17973559 | C-A | Hetero | INTERGENIC |
Deletions: 9
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 30012537 | 30012539 | 1 | |
| Insertion | Chr7 | 22848895 | 22848898 | 2 |
Inversions: 6
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 367263 | Chr6 | 15113597 | OsKitaake12g004300 |
| Translocation | Chr12 | 367943 | Chr4 | 25453325 | OsKitaake12g004300 |
| Translocation | Chr6 | 15068250 | Chr4 | 25457670 | |
| Translocation | Chr11 | 27733915 | Chr8 | 14799356 | OsKitaake11g226300 |