Search Nipponbare

Mutant Information

Mutant Name	701-2 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download 701-2 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 5

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	36804635	G-A	Homo	INTERGENIC
SBS	Chr11	3974283	G-A	Homo	INTERGENIC
SBS	Chr2	19929551	C-A	Homo	INTERGENIC
SBS	Chr2	31545435	A-G	HET	INTERGENIC
SBS	Chr4	24775114	A-T	Homo	INTERGENIC

Deletions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	2009318	2009331	13
Deletion	Chr11	3684282	3684283	1
Deletion	Chr4	5399001	5568000	169000	30
Deletion	Chr6	6182577	6182582	5
Deletion	Chr1	9474943	9474953	10
Deletion	Chr5	17801358	17801363	5
Deletion	Chr5	18406912	18406919	7	LOC_Os05g31620
Deletion	Chr1	22677151	22677168	17	LOC_Os01g40190
Deletion	Chr7	25878806	25886462	7656	2
Deletion	Chr7	28824539	28824546	7

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	4876397	4876399	3
Insertion	Chr4	8091258	8091258	1
Insertion	Chr5	28034317	28034317	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	8960992	10524817

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	28407593	Chr3	18993127
Translocation	Chr6	28407647	Chr3	18992862