Search Results
Mutant Information |
---|
Mutant Name | 701-2 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download 701-2 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
---|
Single base substitutions: 5
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr2 | 19929551 | C-A | Homo | INTERGENIC | |
SBS | Chr11 | 3974283 | G-A | Homo | INTERGENIC | |
SBS | Chr1 | 36804635 | G-A | Homo | INTERGENIC | |
SBS | Chr2 | 31545435 | A-G | HET | INTERGENIC | |
SBS | Chr4 | 24775114 | A-T | Homo | INTERGENIC |
Deletions: 10
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr7 | 2009318 | 2009331 | 13 | |
Deletion | Chr11 | 3684282 | 3684283 | 1 | |
Deletion | Chr4 | 5399001 | 5568000 | 169000 | 30 |
Deletion | Chr6 | 6182577 | 6182582 | 5 | |
Deletion | Chr1 | 9474943 | 9474953 | 10 | |
Deletion | Chr5 | 17801358 | 17801363 | 5 | |
Deletion | Chr5 | 18406912 | 18406919 | 7 | LOC_Os05g31620 |
Deletion | Chr1 | 22677151 | 22677168 | 17 | LOC_Os01g40190 |
Deletion | Chr7 | 25878806 | 25886462 | 7656 | 2 |
Deletion | Chr7 | 28824539 | 28824546 | 7 |
Insertions: 3
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr5 | 28034317 | 28034317 | 1 | |
Insertion | Chr1 | 4876397 | 4876399 | 3 | |
Insertion | Chr4 | 8091258 | 8091258 | 1 |
Inversions: 1
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr8 | 8960992 | 10524817 |
Translocations: 2
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr6 | 28407593 | Chr3 | 18993127 | |
Translocation | Chr6 | 28407647 | Chr3 | 18992862 |