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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25107691	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g43820
SBS	Chr1	36804635	G-A	HOMO	INTERGENIC
SBS	Chr1	36804635	G-A	Homo	INTERGENIC
SBS	Chr1	3691205	T-A	HET	INTRON
SBS	Chr11	8348240	C-T	HOMO	INTRON
SBS	Chr11	8348240	C-T	Homo	INTRON
SBS	Chr12	908036	G-A	HOMO	INTRON
SBS	Chr2	31545435	A-G	HOMO	INTERGENIC
SBS	Chr2	31545435	A-G	Homo	INTERGENIC
SBS	Chr2	32203112	G-A	HET	INTRON
SBS	Chr4	22072944	G-A	HOMO	INTERGENIC
SBS	Chr4	24775114	A-T	HOMO	INTERGENIC
SBS	Chr4	24775114	A-T	Homo	INTERGENIC
SBS	Chr4	28711950	T-A	HOMO	INTERGENIC
SBS	Chr5	14016462	T-G	HET	INTERGENIC
SBS	Chr5	29706713	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g51770
SBS	Chr5	6614084	A-G	HET	INTERGENIC
SBS	Chr6	26417138	C-T	HET	INTERGENIC
SBS	Chr7	17505771	T-C	HOMO	INTRON
SBS	Chr7	26754220	A-C	HET	INTERGENIC
SBS	Chr7	835686	A-T	HOMO	UTR_5_PRIME
SBS	Chr8	22750548	T-A	HET	INTRON
SBS	Chr8	22994861	C-T	HET	UTR_5_PRIME
SBS	Chr8	25116987	C-T	HOMO	INTRON
SBS	Chr8	25116987	C-T	Homo	INTRON
SBS	Chr8	26859204	A-T	HOMO	INTERGENIC
SBS	Chr8	26859204	A-T	Homo	INTERGENIC
SBS	Chr8	5320059	T-A	HET	INTRON
SBS	Chr8	6530396	T-C	HET	INTERGENIC
SBS	Chr8	9183080	G-A	HET	INTERGENIC
SBS	Chr9	3715713	T-G	HET	INTERGENIC

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	2009318	2009331	13
Deletion	Chr4	5314001	5569000	255000	42
Deletion	Chr6	6182577	6182582	5
Deletion	Chr1	8018859	8018866	7	LOC_Os01g14310
Deletion	Chr1	9474943	9474953	10
Deletion	Chr5	17801358	17801363	5
Deletion	Chr5	18406912	18406919	7	LOC_Os05g31620
Deletion	Chr5	22632057	22632058	1
Deletion	Chr1	22677151	22677168	17	LOC_Os01g40190
Deletion	Chr8	25116990	25117004	14
Deletion	Chr7	25878806	25886462	7656	2
Deletion	Chr4	27371329	27371330	1	LOC_Os04g46220
Deletion	Chr7	28824539	28824546	7
Deletion	Chr1	39872693	39872694	1

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr12	9490478	9490479	2
Insertion	Chr5	28034317	28034317	1
Insertion	Chr5	28209587	28209588	2
Insertion	Chr8	20382113	20382120	8
Insertion	Chr9	12599947	12599947	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	8960992	10524817

No Translocation

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