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Mutant Information

Mutant Name	701-4 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download 701-4 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 6

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	36804635	G-A	Homo	INTERGENIC
SBS	Chr11	15194330	G-C	Homo	INTERGENIC
SBS	Chr2	31545435	A-G	Homo	INTERGENIC
SBS	Chr4	24775114	A-T	Homo	INTERGENIC
SBS	Chr8	25116987	C-T	Homo	INTRON
SBS	Chr8	6496766	G-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g11040

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	2009318	2009331	13
Deletion	Chr4	5314001	5568000	254000	42
Deletion	Chr4	5658093	5658105	12
Deletion	Chr6	6182577	6182582	5
Deletion	Chr10	14819949	14819952	3
Deletion	Chr10	17157644	17157652	8	LOC_Os10g32760
Deletion	Chr5	17801358	17801363	5
Deletion	Chr11	20304386	20304387	1
Deletion	Chr11	20418002	20418008	6
Deletion	Chr1	22677151	22677168	17	LOC_Os01g40190
Deletion	Chr8	25116990	25117004	14
Deletion	Chr7	25878806	25886462	7656	2
Deletion	Chr6	28408307	28408308	1

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	23044399	23044401	3
Insertion	Chr1	9445153	9445154	2
Insertion	Chr5	28034317	28034317	1

No Inversion

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	28407645	Chr3	18993137
Translocation	Chr6	28407647	Chr3	18992862