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Mutant Information

Mutant Name	701-5 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download 701-5 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 3

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	36804635	G-A	HET	INTERGENIC
SBS	Chr10	6454462	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g11680
SBS	Chr2	31545435	A-G	Homo	INTERGENIC

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	2009318	2009331	13
Deletion	Chr4	5658093	5658105	12
Deletion	Chr6	6182577	6182582	5
Deletion	Chr1	9474943	9474953	10
Deletion	Chr3	12379511	12394250	14739	3
Deletion	Chr10	14819949	14819952	3
Deletion	Chr10	17157644	17157652	8	LOC_Os10g32760
Deletion	Chr5	17801358	17801363	5
Deletion	Chr11	20304386	20304387	1
Deletion	Chr1	22677151	22677168	17	LOC_Os01g40190
Deletion	Chr4	27371329	27371330	1	LOC_Os04g46220
Deletion	Chr1	42380010	42380012	2

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr5	28034317	28034317	1

No Inversion

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	28407645	Chr3	18993137
Translocation	Chr6	28407647	Chr3	18992862