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Mutant Information

Mutant Name	701-6 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download 701-6 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 8

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr4	28417998	C-T	Homo	INTERGENIC
SBS	Chr8	12605135	G-A	Homo	INTERGENIC
SBS	Chr10	4076264	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr11	10438935	G-A	Homo	INTERGENIC
SBS	Chr11	13773648	A-G	Homo	INTRON
SBS	Chr11	15955217	T-A	Homo	INTERGENIC
SBS	Chr1	36804635	G-A	Homo	INTERGENIC
SBS	Chr8	25116987	C-T	Homo	INTRON

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	5658093	5658105	12
Deletion	Chr6	6182577	6182582	5
Deletion	Chr1	9474943	9474953	10
Deletion	Chr3	12379511	12394250	14739	3
Deletion	Chr10	13639579	13639580	1
Deletion	Chr10	14819949	14819952	3
Deletion	Chr10	17157644	17157652	8	LOC_Os10g32760
Deletion	Chr5	17801358	17801363	5
Deletion	Chr1	22677151	22677168	17	LOC_Os01g40190
Deletion	Chr12	25115817	25115818	1
Deletion	Chr8	25116990	25117004	14
Deletion	Chr7	25878806	25886462	7656	2
Deletion	Chr11	25900001	25959000	59000	8
Deletion	Chr7	28824539	28824546	7
Deletion	Chr4	34417043	34417046	3
Deletion	Chr1	42380010	42380012	2

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr5	28034317	28034317	1
Insertion	Chr1	23044399	23044401	3
Insertion	Chr11	1537365	1537365	1

No Inversion

No Translocation