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Mutant Information

Mutant Name	701-7 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download 701-7 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 3

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	36804635	G-A	Homo	INTERGENIC
SBS	Chr4	24775114	A-T	HET	INTERGENIC
SBS	Chr7	4412013	G-A	Homo	INTERGENIC

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	2009318	2009331	13
Deletion	Chr11	3684282	3684283	1
Deletion	Chr1	3848448	3848449	1
Deletion	Chr6	6182577	6182582	5
Deletion	Chr1	8018859	8018866	7	LOC_Os01g14310
Deletion	Chr1	9474943	9474953	10
Deletion	Chr3	12379511	12394250	14739	3
Deletion	Chr10	13639579	13639580	1
Deletion	Chr10	14819949	14819952	3
Deletion	Chr5	17801358	17801363	5
Deletion	Chr5	18406912	18406919	7	LOC_Os05g31620
Deletion	Chr11	20304386	20304387	1
Deletion	Chr11	20418002	20418008	6
Deletion	Chr5	22632057	22632058	1
Deletion	Chr1	22677151	22677168	17	LOC_Os01g40190
Deletion	Chr7	25878806	25886462	7656	2
Deletion	Chr7	28824539	28824546	7

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	23044399	23044401	3
Insertion	Chr11	3524987	3524987	1
Insertion	Chr2	12093595	12093596	2
Insertion	Chr4	8091258	8091258	1
Insertion	Chr5	28034317	28034317	1
Insertion	Chr9	21309214	21309214	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	8960992	10524817

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	18042969	Chr6	18884388	LOC_Os08g29430