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Mutant Information

Mutant Name	701-8 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download 701-8 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 3

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	36804635	G-A	Homo	INTERGENIC
SBS	Chr2	31545435	A-G	HET	INTERGENIC
SBS	Chr8	25116987	C-T	HET	INTRON

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	3684282	3684283	1
Deletion	Chr4	5658093	5658105	12
Deletion	Chr1	9474943	9474953	10
Deletion	Chr3	12379001	12396000	17000	4
Deletion	Chr11	20304386	20304387	1
Deletion	Chr11	20418002	20418008	6
Deletion	Chr10	20692427	20692428	1
Deletion	Chr1	22677151	22677168	17	LOC_Os01g40190
Deletion	Chr8	25116990	25117004	14
Deletion	Chr7	25878806	25886462	7656	2
Deletion	Chr7	28824539	28824546	7
Deletion	Chr1	42380010	42380012	2

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr5	28034317	28034317	1
Insertion	Chr8	14740268	14740273	6
Insertion	Chr1	23044399	23044401	3
Insertion	Chr11	22202276	22202277	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	8960992	10524817

No Translocation