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Mutant Information

Mutant Name	702-2-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download 702-2-1 Alignment File
Seed Availability	No
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 5

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3786991	G-A	Homo	INTERGENIC
SBS	Chr10	16529486	C-T	Homo	INTERGENIC
SBS	Chr3	20211060	G-A	HET	UTR_5_PRIME
SBS	Chr5	12414853	G-A	Homo	INTERGENIC
SBS	Chr7	21967924	G-C	Homo	INTERGENIC

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	339222	339228	6
Deletion	Chr3	1203608	1203633	25
Deletion	Chr11	3150857	3150861	4	LOC_Os11g06530
Deletion	Chr3	5257466	5257467	1
Deletion	Chr9	11483129	11483141	12
Deletion	Chr11	13257016	13257021	5
Deletion	Chr2	15746275	15746291	16
Deletion	Chr6	19509702	19509709	7
Deletion	Chr2	22091028	22091029	1
Deletion	Chr5	23900213	23900227	14
Deletion	Chr6	26288400	26288403	3	LOC_Os06g43670
Deletion	Chr5	26906113	26906114	1
Deletion	Chr3	29313001	29343000	30000	6
Deletion	Chr2	33691125	33691161	36	LOC_Os02g54990
Deletion	Chr1	35368055	35368057	2	LOC_Os01g61100
Deletion	Chr1	35416849	35416850	1	2
Deletion	Chr1	42661434	42661443	9	LOC_Os01g73640

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	19594748	19594748	1	LOC_Os11g33120
Insertion	Chr8	23241390	23241390	1
Insertion	Chr9	8268126	8268126	1

No Inversion

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	11275894	Chr4	29982090	LOC_Os04g50660
Translocation	Chr7	11275904	Chr4	28090110
Translocation	Chr10	14084730	Chr7	12600942	LOC_Os07g22420