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Mutant Information

Mutant Name	702-5-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download 702-5-1 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8233555	A-T	Homo	INTERGENIC
SBS	Chr3	20211060	G-A	HET	UTR_5_PRIME

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	339222	339228	6
Deletion	Chr4	1962473	1962476	3
Deletion	Chr2	7651748	7651767	19
Deletion	Chr12	9743377	9743379	2
Deletion	Chr12	11214711	11214716	5
Deletion	Chr12	14601507	14601513	6
Deletion	Chr6	14823337	14823340	3
Deletion	Chr2	15746275	15746291	16
Deletion	Chr8	16682503	16682514	11
Deletion	Chr6	20413289	20413290	1
Deletion	Chr2	22091028	22091029	1
Deletion	Chr12	24043316	24043317	1
Deletion	Chr3	26168810	26168822	12
Deletion	Chr6	26288400	26288403	3	LOC_Os06g43670
Deletion	Chr4	33307154	33307155	1
Deletion	Chr1	35368055	35368057	2	LOC_Os01g61100
Deletion	Chr1	35416849	35416850	1	2
Deletion	Chr1	41002017	41002032	15
Deletion	Chr1	42661434	42661443	9	LOC_Os01g73640

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	29807079	29807079	1
Insertion	Chr9	14919926	14919928	3
Insertion	Chr9	8268126	8268126	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	29632343	29853165	2

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	11275894	Chr4	29982090	LOC_Os04g50660
Translocation	Chr7	11275904	Chr4	28090110
Translocation	Chr7	12611538	Chr4	29632363	2