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Mutant Information

Mutant Name	702-6 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download 702-6 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 4

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8233555	A-T	Homo	INTERGENIC
SBS	Chr2	23819739	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g39470
SBS	Chr3	20211060	G-A	Homo	UTR_5_PRIME
SBS	Chr4	5474569	T-C	Homo	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	1962473	1962476	3
Deletion	Chr6	4372176	4372177	1
Deletion	Chr6	9027927	9027940	13
Deletion	Chr10	9170037	9170043	6
Deletion	Chr12	9743377	9743379	2
Deletion	Chr12	11214711	11214716	5
Deletion	Chr11	14550513	14550514	1
Deletion	Chr12	14601507	14601513	6
Deletion	Chr6	14823337	14823340	3
Deletion	Chr2	15746275	15746291	16
Deletion	Chr12	18740001	18783000	43000	6
Deletion	Chr7	23261647	23261648	1
Deletion	Chr5	23900213	23900227	14
Deletion	Chr6	26288400	26288403	3	LOC_Os06g43670
Deletion	Chr3	28850672	28850685	13
Deletion	Chr3	29313001	29349000	36000	7
Deletion	Chr1	35368055	35368057	2	LOC_Os01g61100
Deletion	Chr1	35416849	35416850	1	2
Deletion	Chr1	42661434	42661443	9	LOC_Os01g73640

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr6	17253410	17253410	1
Insertion	Chr9	8268126	8268126	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	4809104	4842646	LOC_Os06g09530

No Translocation