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Mutant Information

Mutant Name	703-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download 703-1 Alignment File
Seed Availability	No
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 4

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr4	25459019	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g43020
SBS	Chr5	9725667	A-G	Homo	INTRON
SBS	Chr9	20808770	G-A	Homo	INTERGENIC
SBS	Chr10	19384947	A-T	Homo	INTERGENIC

Deletions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	79371	79381	10	LOC_Os05g01060
Deletion	Chr6	5863090	5863092	2
Deletion	Chr9	7924677	7972836	48159	4
Deletion	Chr10	9266001	9314000	48000	5
Deletion	Chr5	10540696	10540704	8
Deletion	Chr11	16988191	16988197	6
Deletion	Chr2	19021080	19021081	1
Deletion	Chr2	20249001	20323000	74000	5
Deletion	Chr9	21178443	21178445	2
Deletion	Chr1	31294746	31294751	5

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	15780243	15780244	2
Insertion	Chr8	19094576	19094576	1
Insertion	Chr3	23671316	23671319	4
Insertion	Chr2	8950121	8950122	2
Insertion	Chr2	31933016	31933016	1	LOC_Os02g52170

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	8933978	9726391	LOC_Os10g19100
Inversion	Chr10	9120367	9266080
Inversion	Chr10	9120383	9726402	LOC_Os10g19100
Inversion	Chr10	9313883	9700673	LOC_Os10g19050
Inversion	Chr12	9400828	12175667	LOC_Os12g21660
Inversion	Chr12	9400847	12175679	LOC_Os12g21660

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	3462077	Chr2	22974570	2
Translocation	Chr9	8278702	Chr2	22974564	LOC_Os02g38020
Translocation	Chr9	8279030	Chr2	22975355
Translocation	Chr11	26604995	Chr2	20691803	LOC_Os02g34520

Tandem duplications: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Tandem Duplication	Chr5	19798487	19811665	13178	2