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Mutant Information

Mutant Name	703-3 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download 703-3 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 5

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr10	19384947	A-T	Homo	INTERGENIC
SBS	Chr11	16850788	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g29090
SBS	Chr4	32708390	C-T	Homo	INTERGENIC
SBS	Chr5	17858986	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g30790
SBS	Chr9	13627911	A-G	Homo	SYNONYMOUS_CODING

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	79371	79381	10	LOC_Os05g01060
Deletion	Chr2	922701	922704	3	LOC_Os02g02540
Deletion	Chr5	3409745	3409891	146
Deletion	Chr11	3767794	3767799	5
Deletion	Chr3	9158520	9158521	1
Deletion	Chr9	15110334	15110340	6
Deletion	Chr3	15695148	15695158	10
Deletion	Chr5	16192001	16234000	42000	5
Deletion	Chr11	16988191	16988197	6
Deletion	Chr2	19021080	19021081	1
Deletion	Chr2	20249001	20321000	72000	5
Deletion	Chr2	20531001	20695000	164000	19
Deletion	Chr9	21178443	21178445	2
Deletion	Chr5	28876963	28876968	5	LOC_Os05g50380

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr8	19094576	19094576	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	9400828	12175667	LOC_Os12g21660
Inversion	Chr12	9400847	12175679	LOC_Os12g21660

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	8279038	Chr2	22975351

Tandem duplications: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Tandem Duplication	Chr5	19798487	19811665	13178	2