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Mutant Information

Mutant Name	703-4 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download 703-4 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 15

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	28770923	T-G	Homo	INTERGENIC
SBS	Chr2	8985979	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g15880
SBS	Chr3	23531932	T-A	Homo	INTERGENIC
SBS	Chr3	23531933	C-A	Homo	INTERGENIC
SBS	Chr3	23598722	C-T	Homo	INTERGENIC
SBS	Chr3	23995809	T-A	Homo	INTRON
SBS	Chr6	14297240	G-A	Homo	INTERGENIC
SBS	Chr7	2128961	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr7	13839168	C-T	Homo	INTERGENIC
SBS	Chr7	27094767	T-A	Homo	INTERGENIC
SBS	Chr7	27139087	A-C	Homo	INTERGENIC
SBS	Chr8	2697131	T-C	Homo	INTERGENIC
SBS	Chr10	4842684	A-T	Homo	INTERGENIC
SBS	Chr11	18724129	C-G	Homo	SYNONYMOUS_CODING
SBS	Chr12	11562517	G-A	Homo	INTERGENIC

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	5836001	6050000	214000	28
Deletion	Chr1	6136710	6137369	659	LOC_Os01g11414
Deletion	Chr1	6184268	6184271	3
Deletion	Chr10	6779610	6779611	1
Deletion	Chr1	12900860	12900865	5
Deletion	Chr7	13283882	13283892	10
Deletion	Chr7	17675062	17675063	1
Deletion	Chr2	19021080	19021081	1
Deletion	Chr12	19385241	19385246	5	LOC_Os12g32140
Deletion	Chr1	22674167	22674171	4
Deletion	Chr11	23501172	23501173	1	LOC_Os11g39460
Deletion	Chr6	25688001	25803000	115000	22
Deletion	Chr7	26131868	26131894	26
Deletion	Chr7	27588591	27588596	5
Deletion	Chr5	27882540	27882542	2	LOC_Os05g48640
Deletion	Chr3	31209312	31209313	1	LOC_Os03g54900
Deletion	Chr3	31372691	31372705	14

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr8	19094576	19094576	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	4285237	6048804

No Translocation