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| Mutant Information |
|---|
| Mutant Name | 704-1-1 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download 704-1-1 Alignment File |
| Seed Availability | No |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 12
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 13402179 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os01g23820 |
| SBS | Chr1 | 13402181 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os01g23820 |
| SBS | Chr1 | 31040549 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 34508949 | A-T | Homo | INTRON | |
| SBS | Chr11 | 2533770 | C-A | Homo | INTERGENIC | |
| SBS | Chr12 | 5286638 | C-G | Homo | INTERGENIC | |
| SBS | Chr12 | 6629708 | C-A | Homo | INTERGENIC | |
| SBS | Chr3 | 34903308 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 26937063 | C-G | Homo | INTERGENIC | |
| SBS | Chr5 | 14403253 | G-A | Homo | INTRON | |
| SBS | Chr6 | 21497878 | A-T | Homo | INTRON | |
| SBS | Chr8 | 9200899 | C-T | Homo | SYNONYMOUS_CODING |
Deletions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 4714896 | 4714908 | 12 | |
| Deletion | Chr8 | 10873325 | 10873326 | 1 | |
| Deletion | Chr5 | 14492798 | 14492812 | 14 | |
| Deletion | Chr10 | 14539176 | 14539187 | 11 | |
| Deletion | Chr12 | 15383094 | 15383095 | 1 | |
| Deletion | Chr8 | 22201140 | 22201141 | 1 | |
| Deletion | Chr2 | 23584002 | 23584492 | 490 | |
| Deletion | Chr7 | 23752211 | 23752212 | 1 | |
| Deletion | Chr3 | 26073765 | 26073768 | 3 | LOC_Os03g46110 |
| Deletion | Chr8 | 27287397 | 27287448 | 51 | |
| Deletion | Chr2 | 27351425 | 27351427 | 2 | |
| Deletion | Chr4 | 32750516 | 32750521 | 5 | LOC_Os04g55070 |
No Insertion
Inversions: 5
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr10 | 5155641 | 5269489 | LOC_Os10g09740 |
| Inversion | Chr10 | 5157907 | 5233725 | LOC_Os10g09550 |
| Inversion | Chr10 | 5212726 | 5233726 | |
| Inversion | Chr8 | 13866810 | 16628862 | 2 |
| Inversion | Chr2 | 19923188 | 19935977 | LOC_Os02g33510 |
Translocations: 3
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 4132488 | Chr11 | 9057168 | LOC_Os11g16390 |
| Translocation | Chr8 | 16628790 | Chr3 | 6568952 | 2 |
| Translocation | Chr12 | 23626310 | Chr2 | 23584484 |